Variant report

Variant	nsv516906
Chromosome Location	chr9:25913301-25919851
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 116 )

Variant overlapped rSNPs/rCNVs (count:151 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372649919	chr9:25914805-25914806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs118052712	chr9:25914806-25914807	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs565186257	chr9:25914875-25914876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs577378671	chr9:25914876-25914877	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs544780470	chr9:25914907-25914908	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs563193717	chr9:25914909-25914910	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs7032063	chr9:25914919-25914920	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs548882780	chr9:25914932-25914933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs560987987	chr9:25914947-25914948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs370959120	chr9:25914952-25914953	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181868728	chr9:25914970-25914971	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs76228747	chr9:25914996-25914997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs10812323	chr9:25915444-25915445	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs560584841	chr9:25915475-25915476	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs115719952	chr9:25915484-25915485	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs573014101	chr9:25915487-25915488	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs546254125	chr9:25915514-25915515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs148591401	chr9:25915533-25915534	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs532110086	chr9:25915535-25915536	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs550253868	chr9:25915551-25915552	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs138617297	chr9:25917024-25917025	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs530153074	chr9:25917035-25917036	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs183625780	chr9:25917065-25917066	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188134189	chr9:25917080-25917081	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs373720507	chr9:25917126-25917127	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs567369049	chr9:25917153-25917154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs192751665	chr9:25917203-25917204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs148906226	chr9:25917231-25917232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs143547414	chr9:25917261-25917262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs560144530	chr9:25917283-25917284	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs572164567	chr9:25917364-25917365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs79808111	chr9:25917386-25917387	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs59885701	chr9:25917428-25917429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs375011060	chr9:25917432-25917433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs564253916	chr9:25917447-25917448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs531673597	chr9:25917458-25917459	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs550090062	chr9:25917472-25917473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs529628100	chr9:25917473-25917474	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs529241266	chr9:25917511-25917512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs114533272	chr9:25917528-25917529	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs138158408	chr9:25917582-25917583	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs539665725	chr9:25917603-25917604	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs551586674	chr9:25917651-25917652	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs569899672	chr9:25917654-25917655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs1219938	chr9:25917668-25917669	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs528693136	chr9:25917691-25917692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs60181404	chr9:25917704-25917705	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs80117548	chr9:25917756-25917757	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs550930055	chr9:25917771-25917772	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs375413130	chr9:25917786-25917787	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:116)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25914800-25915000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:25915400-25915600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:25917000-25918800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:25917200-25918200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:25917400-25919000	Enhancers	Hela-S3	cervix
6	chr9:25917600-25918200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:25917600-25918800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:25917600-25919000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:25917600-25919400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:25917800-25918200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:25918000-25918400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:25918200-25923200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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