Variant report

Variant	nsv517135
Chromosome Location	chr6:4571784-4572377
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4566232..4568261-chr6:4571850..4574197,2	K562	blood:
2	chr6:4334813..4337787-chr6:4569506..4572040,2	K562	blood:
3	chr6:4566632..4568835-chr6:4570371..4571967,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP40-11	chr6:4571966-4572120	NONHSAT107453

Extended variants
information (count: 23 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7739453	chr6:4571784-4571785	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs574004789	chr6:4571817-4571818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs184477306	chr6:4571852-4571853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs376670825	chr6:4571872-4571873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs550838502	chr6:4571906-4571907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs111707653	chr6:4571924-4571925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs561432631	chr6:4571946-4571947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs116822385	chr6:4571947-4571948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs546077339	chr6:4571948-4571949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs562681172	chr6:4571972-4571973	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs543116509	chr6:4571989-4571990	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs151301372	chr6:4571997-4571998	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs377207	chr6:4572014-4572015	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs371615936	chr6:4572132-4572133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376182530	chr6:4572154-4572155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs59492037	chr6:4572185-4572186	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs188382665	chr6:4572215-4572216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs564089289	chr6:4572257-4572258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs140576894	chr6:4572308-4572309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs1923308	chr6:4572331-4572332	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs144284777	chr6:4572334-4572335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs117209515	chr6:4572353-4572354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs17138501	chr6:4572377-4572378	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21364760	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
dysmorphism	22105932	CNVD
psychomotor delay	22105932	CNVD
Ovarian cancer	19193619	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4560000-4572400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:4564000-4577800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:4568000-4575800	Weak transcription	Osteobl	bone
4	chr6:4568400-4581800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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