Variant report

Variant	nsv517951
Chromosome Location	chr22:29105558-29135889
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr22:29107841-29108771	HepG2	liver:	n/a	n/a
2	ATF3	chr22:29108352-29108738	A549	lung:	n/a	n/a
3	BATF	chr22:29110124-29110396	GM12878	blood:	n/a	n/a
4	BATF	chr22:29110082-29110388	GM12878	blood:	n/a	n/a
5	BCL3	chr22:29108214-29108740	A549	lung:	n/a	n/a
6	BCL3	chr22:29108146-29108868	A549	lung:	n/a	n/a
7	BRCA1	chr22:29108040-29108805	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr22:29108294-29108738	ECC-1	luminal epithelium:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
9	CEBPB	chr22:29108062-29108723	HepG2	liver:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
10	CEBPB	chr22:29108439-29108591	K562	blood:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
11	CEBPB	chr22:29124609-29124927	IMR90	lung:	n/a	n/a
12	CEBPB	chr22:29107879-29109128	Hela-S3	cervix:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
13	CEBPB	chr22:29106203-29107290	Hela-S3	cervix:	n/a	n/a
14	CEBPB	chr22:29108057-29108754	IMR90	lung:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
15	CEBPB	chr22:29108402-29108673	HepG2	liver:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
16	CEBPB	chr22:29108079-29108362	HepG2	liver:	n/a	chr22:29108258-29108269
17	CEBPB	chr22:29108337-29108640	HCT-116	colon:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
18	CEBPB	chr22:29108070-29108734	HepG2	liver:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
19	CEBPB	chr22:29107903-29108935	A549	lung:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
20	CEBPB	chr22:29107889-29108729	A549	lung:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
21	CEBPB	chr22:29108293-29108780	ECC-1	luminal epithelium:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
22	CEBPB	chr22:29108404-29108597	K562	blood:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
23	CEBPB	chr22:29124585-29124959	Hela-S3	cervix:	n/a	n/a
24	CEBPB	chr22:29108257-29108827	HCT-116	colon:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
25	CEBPB	chr22:29108373-29108761	HepG2	liver:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
26	CEBPB	chr22:29107993-29108814	A549	lung:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
27	CEBPB	chr22:29108257-29108753	MCF-7	breast:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
28	CEBPB	chr22:29108214-29108682	K562	blood:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539 chr22:29108258-29108269
29	CEBPB	chr22:29107936-29108348	HepG2	liver:	n/a	chr22:29108258-29108269
30	CEBPB	chr22:29108358-29108703	H1-hESC	embryonic stem cell:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
31	CEBPB	chr22:29108296-29108728	MCF-7	breast:	n/a	chr22:29108530-29108541 chr22:29108530-29108539 chr22:29108528-29108539
32	CEBPD	chr22:29108431-29108701	HepG2	liver:	n/a	chr22:29108529-29108540
33	CTCF	chr22:29107920-29108070	AG04449	skin:	n/a	n/a
34	CTCF	chr22:29106860-29107010	HMF	breast:	n/a	n/a
35	CTCF	chr22:29108280-29108430	AG04450	lung:	n/a	n/a
36	CTCF	chr22:29107880-29108030	BE2_C	brain:	n/a	n/a
37	CTCF	chr22:29107000-29107150	HCPEpiC	choroid plexus:	n/a	n/a
38	CTCF	chr22:29123500-29123650	GM06990	blood:	n/a	n/a
39	CTCF	chr22:29107860-29108010	Caco-2	colon:	n/a	n/a
40	CTCF	chr22:29106960-29107110	NHDF-neo	bronchial:	n/a	n/a
41	CTCF	chr22:29107920-29108070	BJ	skin:	n/a	n/a
42	CTCF	chr22:29107900-29108050	HPF	lung:	n/a	n/a
43	CTCF	chr22:29107940-29108090	HepG2	liver:	n/a	n/a
44	CTCF	chr22:29107880-29108030	BJ	skin:	n/a	n/a
45	CTCF	chr22:29107960-29108110	RPTEC	kidney:	n/a	n/a
46	CTCF	chr22:29107920-29108070	HCFaa	heart:	n/a	n/a
47	CTCF	chr22:29107960-29108110	HFF	foreskin:	n/a	n/a
48	CTCF	chr22:29107960-29108110	HVMF	connective:	n/a	n/a
49	CTCF	chr22:29107065-29107127	HUVEC	blood vessel:	n/a	n/a
50	CTCF	chr22:29107880-29108030	SK-N-SH_RA	brain:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr22:29134743-29134793	AG04449	skin:	fetal
2	chr22:29134743-29134793	PANC-1	pancreas:	n/a
3	chr22:29134743-29134793	Hela-S3	cervix:	n/a
4	chr22:29134743-29134793	U87	brain:	n/a
5	chr22:29134743-29134793	ProgFib	skin:	n/a
6	chr22:29134743-29134793	A549	lung:	n/a
7	chr22:29134743-29134793	HUVEC	blood vessel:	n/a
8	chr22:29134743-29134793	GM12892	blood:	n/a
9	chr22:29134743-29134793	HL-60	blood:	n/a
10	chr22:29134743-29134793	MCF10A-Er-Src	breast:	n/a
11	chr22:29134743-29134793	GM12878	blood:	n/a
12	chr22:29134743-29134793	T-47D	breast:	n/a
13	chr22:29134743-29134793	SK-N-SH_RA	brain:	n/a
14	chr22:29134743-29134793	HMEC	breast:	n/a
15	chr22:29134743-29134793	HCM	heart:	n/a
16	chr22:29134743-29134793	HRCEpiC	kidney:	n/a
17	chr22:29134743-29134793	K562	blood:	n/a
18	chr22:29134743-29134793	NB4	blood:	n/a
19	chr22:29134743-29134793	AG09319	gingival:	n/a
20	chr22:29134743-29134793	ECC-1	luminal epithelium:	n/a
21	chr22:29134743-29134793	HNPCEpiC	eye:	n/a
22	chr22:29134743-29134793	HCPEpiC	choroid plexus:	n/a
23	chr22:29134743-29134793	Caco-2	colon:	n/a
24	chr22:29134743-29134793	HAEpiC	amniotic membrane:	n/a
25	chr22:29134743-29134793	GM06990	blood:	n/a
26	chr22:29134743-29134793	HRPEpiC	eye:	n/a
27	chr22:29134743-29134793	Jurkat	blood:	n/a
28	chr22:29134743-29134793	NHBE	bronchial:	n/a
29	chr22:29134743-29134793	CMK	blood:	n/a
30	chr22:29134743-29134793	IMR90	lung:	fetal
31	chr22:29134743-29134793	PrEC	prostate:	n/a
32	chr22:29134743-29134793	PFSK-1	brain:	n/a
33	chr22:29134743-29134793	HEEpiC	esophagus:	n/a
34	chr22:29134743-29134793	HEK293	kidney:	embryo
35	chr22:29134743-29134793	BE2_C	brain:	n/a
36	chr22:29134743-29134793	HPAEpiC	pulmonary alveolar:	n/a
37	chr22:29134743-29134793	HIPEpiC	eye:	n/a
38	chr22:29134743-29134793	AG04450	lung:	fetal
39	chr22:29134743-29134793	SAEC	small airway:	n/a
40	chr22:29134743-29134793	RPTEC	kidney:	n/a
41	chr22:29134743-29134793	LNCaP	prostate:	n/a
42	chr22:29134743-29134793	AG09309	skin:	n/a
43	chr22:29134743-29134793	HRE	kidney:	n/a
44	chr22:29134743-29134793	MCF-7	breast:	n/a
45	chr22:29134743-29134793	NH-A	brain:	n/a
46	chr22:29134743-29134793	ovcar-3	ovarian:	n/a
47	chr22:29134743-29134793	H1-hESC	embryonic stem cell:	embryo
48	chr22:29134743-29134793	Hepatocyte	liver:	n/a
49	chr22:29134743-29134793	GM12891	blood:	n/a
50	chr22:29134743-29134793	HCF	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr22:29134212..29140528-chr22:29167074..29172462,20	MCF-7	breast:
2	chr22:29131911..29134961-chr22:29136110..29138842,3	K562	blood:
3	chr22:29127658..29141630-chr22:29187451..29201381,67	MCF-7	breast:
4	chr22:29133133..29134961-chr22:29136110..29137715,2	K562	blood:
5	chr22:29117174..29121072-chr22:29214167..29218660,4	MCF-7	breast:
6	chr22:29135038..29141691-chr22:29167545..29172967,16	MCF-7	breast:
7	chr22:29129415..29131675-chr22:29131863..29134375,2	MCF-7	breast:
8	chr22:29134319..29139472-chr22:29186598..29194420,8	K562	blood:
9	chr22:29118802..29121164-chr22:29193533..29196083,2	MCF-7	breast:
10	chr22:29126583..29142031-chr22:29203252..29220632,67	MCF-7	breast:
11	chr22:29117650..29119944-chr22:29134388..29136343,2	MCF-7	breast:
12	chr22:29103207..29105613-chr22:29137554..29139656,2	MCF-7	breast:
13	chr22:29124921..29127441-chr22:29136398..29138709,2	K562	blood:
14	chr22:29133124..29135770-chr22:29178990..29181478,2	MCF-7	breast:
15	chr22:29117650..29119944-chr22:29134388..29136343,2	MCF-7	breast:
16	chr22:29123719..29125276-chr22:29194565..29196518,3	MCF-7	breast:
17	chr22:29134224..29141746-chr22:29191206..29200044,27	MCF-7	breast:
18	chr22:29121818..29125415-chr22:29136327..29139061,3	MCF-7	breast:
19	chr22:29106300..29106832-chr6:153441688..153442188,2	Hela-S3	cervix:
20	chr22:29116498..29119030-chr22:29122094..29124064,2	MCF-7	breast:
21	chr22:29116498..29119030-chr22:29122094..29124064,2	MCF-7	breast:
22	chr22:29133437..29141650-chr22:29203240..29216422,34	MCF-7	breast:
23	chr22:29134226..29139597-chr22:29164663..29170736,9	K562	blood:
24	chr22:29123587..29125370-chr22:29195302..29198150,2	MCF-7	breast:

Variant related genes	Relation type
CHEK2	TF binding region
HSCB	TF binding region
CHEK2	CpG island
HSCB	CpG island
ENSG00000183765	chromatin interactions
ENSG00000272858	chromatin interactions
ENSG00000226471	chromatin interactions
ENSG00000100219	chromatin interactions
ENSG00000159873	chromatin interactions
ENSG00000100209	chromatin interactions

Extended variants
information (count: 1107 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:1107 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2073327	chr22:29105558-29105559	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs554660964	chr22:29105568-29105569	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs5752774	chr22:29105610-29105611	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs543427123	chr22:29105644-29105645	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs558109602	chr22:29105645-29105646	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs576761793	chr22:29105665-29105666	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs540922225	chr22:29105714-29105715	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs559174750	chr22:29105820-29105821	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs529908139	chr22:29105852-29105853	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs372969631	chr22:29105856-29105857	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs561453037	chr22:29105889-29105890	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs554284738	chr22:29105895-29105896	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs374478603	chr22:29105944-29105945	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs369672660	chr22:29105947-29105948	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs17884483	chr22:29105959-29105960	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs376417788	chr22:29105972-29105973	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs5997387	chr22:29106058-29106059	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs201218422	chr22:29106075-29106076	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs548114807	chr22:29106127-29106128	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs368884838	chr22:29106130-29106131	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs566204837	chr22:29106137-29106138	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs536868834	chr22:29106162-29106163	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs9625541	chr22:29106174-29106175	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs569761496	chr22:29106188-29106189	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs536733979	chr22:29106258-29106259	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs537543577	chr22:29106335-29106336	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs558176833	chr22:29106345-29106346	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs17881138	chr22:29106349-29106350	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs184651332	chr22:29106460-29106461	Weak transcription Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs115106202	chr22:29106465-29106466	Weak transcription Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs539002633	chr22:29106521-29106522	Weak transcription Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs16986630	chr22:29106547-29106548	Weak transcription Strong transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs368334765	chr22:29106597-29106598	Weak transcription Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs189441871	chr22:29106722-29106723	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs1884816	chr22:29106733-29106734	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs17879101	chr22:29106736-29106737	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs576519652	chr22:29106858-29106859	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs139201413	chr22:29106869-29106870	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs1884817	chr22:29106945-29106946	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs118116985	chr22:29106967-29106968	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs532562321	chr22:29106971-29106972	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs558837699	chr22:29106980-29106981	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs547779924	chr22:29107020-29107021	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs35836281	chr22:29107023-29107024	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs5752775	chr22:29107195-29107196	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs374836763	chr22:29107227-29107228	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs17883539	chr22:29107301-29107302	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs370165111	chr22:29107355-29107356	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs17885505	chr22:29107393-29107394	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs369214179	chr22:29107394-29107395	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Velocardiofacial syndrome	20111667	CNVD
Medulloblastoma	21979893	CNVD
sporadic solitary meningiomas	19589153	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Congenital heart defect	22511896	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Seminomas	18059402	CNVD
Cancer	16751803	CNVD
Metanephric adenoma	20802469	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Metachromatic leukodystrophy	18421352	CNVD
Basal cell lymphoma	17170743	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Breast cancer	21858162	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	22174824	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	21251322	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Medullary thyroid carcinoma	18765511	CNVD
Lung cancer	18438408	CNVD
Pancreatic endocrine tumor	17639061	CNVD
abnormal development	18461090	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
small cell lung cancer	20016488	CNVD
Cancer	21183584	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Cat eye syndrome	16708226	CNVD
Olfactory neuroblastoma	18408657	CNVD
Renal cell carcinoma	18765545	CNVD
Schizophrenia	19521646	CNVD
Schizophrenia	18990708	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Myelofibrosis	22110671	CNVD
Non-small cell lung cancer	21829676	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:811 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29076200-29137600	Weak transcription	Esophagus	oesophagus
2	chr22:29076400-29105800	Weak transcription	NHLF	lung
3	chr22:29076400-29119200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr22:29076400-29129400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr22:29077400-29106000	Weak transcription	A549	lung
6	chr22:29079600-29130200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:29082200-29109800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr22:29082800-29106000	Weak transcription	Liver	Liver
9	chr22:29082800-29137600	Weak transcription	Spleen	Spleen
10	chr22:29083000-29126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr22:29085000-29116600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr22:29086200-29106600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr22:29086400-29106000	Weak transcription	HSMM	muscle
14	chr22:29087800-29106200	Weak transcription	Fetal Lung	lung
15	chr22:29088600-29118600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr22:29090200-29129000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr22:29090400-29106000	Weak transcription	HSMMtube	muscle
18	chr22:29090400-29110800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr22:29090600-29137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr22:29090600-29137200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr22:29090800-29108000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr22:29091000-29116600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr22:29091000-29120200	Weak transcription	Placenta	Placenta
24	chr22:29092000-29108600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:29092600-29106200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr22:29093600-29121800	Weak transcription	Small Intestine	intestine
27	chr22:29093600-29132000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr22:29093800-29126600	Weak transcription	Gastric	stomach
29	chr22:29094600-29125000	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr22:29095200-29114600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr22:29096000-29106200	Weak transcription	Fetal Muscle Leg	muscle
32	chr22:29096600-29106200	Weak transcription	K562	blood
33	chr22:29097000-29130800	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr22:29098400-29105800	Weak transcription	NHDF-Ad	bronchial
35	chr22:29098600-29108000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr22:29098800-29111400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr22:29099000-29109600	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr22:29099400-29109800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr22:29099800-29105600	Weak transcription	Fetal Thymus	thymus
40	chr22:29099800-29106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr22:29099800-29129000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr22:29100400-29137200	Weak transcription	Pancreas	Pancrea
43	chr22:29101200-29118800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr22:29101400-29107200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr22:29101600-29106200	Strong transcription	Fetal Intestine Small	intestine
46	chr22:29101600-29131000	Strong transcription	Dnd41	blood
47	chr22:29101800-29106000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr22:29102000-29106400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr22:29102000-29108200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr22:29102000-29108200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links