Variant report

Variant	nsv518466
Chromosome Location	chr3:53832903-53882663
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1398)
CpG islands
(count:1709)
Chromatin interactive
region (count:41)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1398 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:53875409-53875638	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:53876698-53878019	HepG2	liver:	n/a	chr3:53877014-53877030
3	ARID3A	chr3:53878608-53878939	HepG2	liver:	n/a	n/a
4	ARID3A	chr3:53880305-53880971	HepG2	liver:	n/a	n/a
5	BACH1	chr3:53879511-53879848	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr3:53876560-53877103	H1-hESC	embryonic stem cell:	n/a	n/a
7	BATF	chr3:53850518-53850789	GM12878	blood:	n/a	n/a
8	BHLHE40	chr3:53882631-53882725	GM12878	blood:	n/a	n/a
9	BHLHE40	chr3:53840974-53841053	GM12878	blood:	n/a	n/a
10	BHLHE40	chr3:53880154-53880774	HepG2	liver:	n/a	n/a
11	BHLHE40	chr3:53879719-53880817	GM12878	blood:	n/a	chr3:53880063-53880079
12	BHLHE40	chr3:53839195-53839556	GM12878	blood:	n/a	chr3:53839342-53839363 chr3:53839346-53839359
13	BHLHE40	chr3:53880178-53880482	HepG2	liver:	n/a	n/a
14	BHLHE40	chr3:53876633-53877763	HepG2	liver:	n/a	n/a
15	BHLHE40	chr3:53880224-53880527	K562	blood:	n/a	n/a
16	BHLHE40	chr3:53877854-53878245	GM12878	blood:	n/a	n/a
17	BHLHE40	chr3:53880315-53880471	A549	lung:	n/a	n/a
18	BHLHE40	chr3:53876815-53877169	HepG2	liver:	n/a	n/a
19	BHLHE40	chr3:53876853-53877464	GM12878	blood:	n/a	n/a
20	BRCA1	chr3:53879183-53879326	HepG2	liver:	n/a	n/a
21	BRCA1	chr3:53876900-53877389	HepG2	liver:	n/a	n/a
22	BRCA1	chr3:53880497-53880762	HepG2	liver:	n/a	n/a
23	BRCA1	chr3:53879626-53879935	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr3:53836759-53836763	Hela-S3	cervix:	n/a	n/a
25	BRCA1	chr3:53852292-53852425	HepG2	liver:	n/a	n/a
26	CCNT2	chr3:53880326-53880543	K562	blood:	n/a	n/a
27	CEBPB	chr3:53876851-53877764	HepG2	liver:	n/a	n/a
28	CEBPB	chr3:53880283-53880471	H1-hESC	embryonic stem cell:	n/a	n/a
29	CEBPB	chr3:53877460-53877686	HepG2	liver:	n/a	n/a
30	CEBPB	chr3:53876034-53876183	HepG2	liver:	n/a	n/a
31	CEBPB	chr3:53879581-53880012	H1-hESC	embryonic stem cell:	n/a	n/a
32	CEBPB	chr3:53879606-53879989	Hela-S3	cervix:	n/a	n/a
33	CEBPB	chr3:53876832-53877005	HepG2	liver:	n/a	n/a
34	CEBPB	chr3:53880290-53880553	Hela-S3	cervix:	n/a	n/a
35	CEBPD	chr3:53880268-53880763	HepG2	liver:	n/a	n/a
36	CEBPD	chr3:53876789-53877212	HepG2	liver:	n/a	n/a
37	CEBPD	chr3:53876698-53877268	HepG2	liver:	n/a	n/a
38	CEBPD	chr3:53880128-53880796	HepG2	liver:	n/a	n/a
39	CEBPD	chr3:53877372-53877757	HepG2	liver:	n/a	n/a
40	CHD1	chr3:53876879-53876933	GM12878	blood:	n/a	n/a
41	CHD1	chr3:53879613-53879845	GM12878	blood:	n/a	n/a
42	CHD1	chr3:53880227-53880385	H1-hESC	embryonic stem cell:	n/a	n/a
43	CHD1	chr3:53879757-53879948	H1-hESC	embryonic stem cell:	n/a	n/a
44	CHD1	chr3:53878335-53878370	GM12878	blood:	n/a	n/a
45	CHD1	chr3:53880195-53880679	GM12878	blood:	n/a	n/a
46	CHD2	chr3:53845847-53845978	HepG2	liver:	n/a	n/a
47	CHD2	chr3:53876590-53877911	HepG2	liver:	n/a	n/a
48	CHD2	chr3:53879510-53879857	H1-hESC	embryonic stem cell:	n/a	n/a
49	CHD2	chr3:53880264-53880758	Hela-S3	cervix:	n/a	n/a
50	CHD2	chr3:53879789-53879807	GM12878	blood:	n/a	n/a

(count:1709 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:53855929-53855979	Hepatocyte	liver:	n/a
2	chr3:53855929-53855979	Hepatocyte	liver:	n/a
3	chr3:53839251-53839301	AG09309	skin:	n/a
4	chr3:53860720-53860770	HepG2	liver:	n/a
5	chr3:53843939-53843989	AG09319	gingival:	n/a
6	chr3:53878642-53878692	HNPCEpiC	eye:	n/a
7	chr3:53878642-53878692	SK-N-SH	brain:	n/a
8	chr3:53855125-53855175	Jurkat	blood:	n/a
9	chr3:53839610-53839660	AG09319	gingival:	n/a
10	chr3:53857445-53857495	HIPEpiC	eye:	n/a
11	chr3:53857939-53857989	NH-A	brain:	n/a
12	chr3:53855125-53855175	Hela-S3	cervix:	n/a
13	chr3:53880376-53880426	Hepatocyte	liver:	n/a
14	chr3:53855929-53855979	HEK293	kidney:	embryo
15	chr3:53850724-53850774	BJ	skin:	n/a
16	chr3:53843939-53843989	Caco-2	colon:	n/a
17	chr3:53880775-53880825	A549	lung:	n/a
18	chr3:53857989-53858039	HIPEpiC	eye:	n/a
19	chr3:53839610-53839660	BJ	skin:	n/a
20	chr3:53855125-53855175	HL-60	blood:	n/a
21	chr3:53857989-53858039	GM12878	blood:	n/a
22	chr3:53880378-53880428	HCT-116	colon:	n/a
23	chr3:53855929-53855979	Jurkat	blood:	n/a
24	chr3:53880376-53880426	BJ	skin:	n/a
25	chr3:53844172-53844222	ovcar-3	ovarian:	n/a
26	chr3:53855125-53855175	AG04449	skin:	fetal
27	chr3:53860720-53860770	AG09309	skin:	n/a
28	chr3:53879950-53880000	NHBE	bronchial:	n/a
29	chr3:53839610-53839660	GM12892	blood:	n/a
30	chr3:53857445-53857495	NHBE	bronchial:	n/a
31	chr3:53880378-53880428	PrEC	prostate:	n/a
32	chr3:53839610-53839660	HAEpiC	amniotic membrane:	n/a
33	chr3:53880378-53880428	K562	blood:	n/a
34	chr3:53880853-53880903	MCF10A-Er-Src	breast:	n/a
35	chr3:53877436-53877486	AG09309	skin:	n/a
36	chr3:53857939-53857989	SK-N-SH	brain:	n/a
37	chr3:53857939-53857989	AG04450	lung:	fetal
38	chr3:53857939-53857989	HL-60	blood:	n/a
39	chr3:53844068-53844118	HNPCEpiC	eye:	n/a
40	chr3:53880378-53880428	PFSK-1	brain:	n/a
41	chr3:53880378-53880428	U87	brain:	n/a
42	chr3:53857698-53857748	PFSK-1	brain:	n/a
43	chr3:53880775-53880825	PANC-1	pancreas:	n/a
44	chr3:53878642-53878692	AoSMC	blood vessel:	n/a
45	chr3:53878642-53878692	MCF10A-Er-Src	breast:	n/a
46	chr3:53860720-53860770	HCF	heart:	n/a
47	chr3:53880872-53880922	HCPEpiC	choroid plexus:	n/a
48	chr3:53855929-53855979	MCF-7	breast:	n/a
49	chr3:53880366-53880416	AG04450	lung:	fetal
50	chr3:53845287-53845337	ovcar-3	ovarian:	n/a

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:53841487..53843004-chr3:53876631..53879451,2	MCF-7	breast:
2	chr11:62609135..62609723-chr3:53845168..53845688,6	HCT-116	colon:
3	chr3:53874777..53878635-chr3:53878874..53882397,7	MCF-7	breast:
4	chr3:53844168..53845668-chr3:73159088..73161601,2	K562	blood:
5	chr17:41464201..41466333-chr3:53844168..53847168,4	K562	blood:
6	chr3:28282969..28283575-chr3:53879378..53880306,2	Hela-S3	cervix:
7	chr11:62609137..62610648-chr3:53844188..53845688,2	MCF-7	breast:
8	chr3:53882366..53883990-chr3:53889340..53891284,2	MCF-7	breast:
9	chr3:53844590..53847374-chr3:53851329..53853049,2	K562	blood:
10	chr1:160082464..160083987-chr3:53844168..53845688,2	K562	blood:
11	chr3:53826568..53829356-chr3:53836868..53838582,2	K562	blood:
12	chr3:53846376..53848488-chr3:53854187..53856200,2	MCF-7	breast:
13	chr3:53879945..53880611-chr6:30028486..30029019,2	Hela-S3	cervix:
14	chr3:53844590..53847374-chr3:53851329..53853049,2	K562	blood:
15	chr3:53874952..53876547-chr3:53878295..53881175,2	K562	blood:
16	chr3:53866125..53868465-chr3:53874787..53877078,2	K562	blood:
17	chr3:53880225..53881825-chr3:53914407..53917091,2	MCF-7	breast:
18	chr3:53849527..53851449-chr3:53878802..53881652,2	MCF-7	breast:
19	chr3:53853872..53855809-chr3:53924023..53926528,2	K562	blood:
20	chr3:53288526..53291244-chr3:53879304..53881119,2	MCF-7	breast:
21	chr3:53846376..53848488-chr3:53854187..53856200,2	MCF-7	breast:
22	chr3:53865722..53867529-chr3:53870209..53872321,2	MCF-7	breast:
23	chr3:53859983..53863659-chr3:53876929..53880341,3	MCF-7	breast:
24	chr11:62607628..62610723-chr3:53844168..53845688,3	K562	blood:
25	chr3:53866511..53869792-chr3:53878002..53881981,4	MCF-7	breast:
26	chr3:53827199..53830305-chr3:53832365..53836212,3	MCF-7	breast:
27	chr1:160082467..160082984-chr3:53845168..53845688,2	MCF-7	breast:
28	chr3:53841128..53843687-chr3:53845515..53847366,2	K562	blood:
29	chr3:53844168..53847188-chr3:73158624..73161592,4	K562	blood:
30	chr3:53526182..53528875-chr3:53879796..53881358,2	MCF-7	breast:
31	chr17:41465368..41466186-chr3:53845668..53846168,2	NB4	blood:
32	chr10:103124630..103126130-chr3:53844188..53847168,2	K562	blood:
33	chr17:41399053..41400665-chr3:53844168..53845688,2	MCF-7	breast:
34	chr3:53882268..53884684-chr3:53906455..53909246,2	MCF-7	breast:
35	chr3:53857432..53859908-chr3:53878977..53881329,3	MCF-7	breast:
36	chr3:53871494..53874275-chr3:53875042..53877358,2	MCF-7	breast:
37	chr3:53871494..53874275-chr3:53875042..53877358,2	MCF-7	breast:
38	chr3:53865722..53867529-chr3:53870209..53872321,2	MCF-7	breast:
39	chr3:53841128..53843687-chr3:53845515..53847366,2	K562	blood:
40	chr3:53866125..53868465-chr3:53874787..53877078,2	K562	blood:
41	chr17:41398908..41400636-chr3:53845668..53847188,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACTR8-3	chr3:53868060-53870643	ncRnaDb_ncrna_FR081823_1

No data

Variant related genes	Relation type
CHDH	TF binding region
IL17RB	TF binding region
ENSG00000271916	TF binding region
CHDH	CpG island
IL17RB	CpG island
ENSG00000271916	CpG island
ENSG00000222888	chromatin interactions
ENSG00000113811	chromatin interactions
ENSG00000204623	chromatin interactions
ENSG00000157388	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000163931	chromatin interactions
ENSG00000222414	chromatin interactions
ENSG00000223247	chromatin interactions
ENSG00000056736	chromatin interactions
ENSG00000016391	chromatin interactions
ENSG00000187118	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000113812	chromatin interactions

Extended variants
information (count: 2088 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:2088 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3774609	chr3:53832903-53832904	Bivalent Enhancer Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs528679162	chr3:53832933-53832934	Bivalent Enhancer Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs144999695	chr3:53832965-53832966	Bivalent Enhancer Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs368184087	chr3:53832973-53832974	Bivalent Enhancer Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs186069909	chr3:53833015-53833016	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs535910693	chr3:53833026-53833027	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs191414953	chr3:53833027-53833028	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs111236050	chr3:53833059-53833060	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs149120622	chr3:53833078-53833079	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs370729512	chr3:53833094-53833095	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs558805471	chr3:53833143-53833144	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs367583496	chr3:53833164-53833165	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs572195033	chr3:53833180-53833181	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs143166379	chr3:53833185-53833186	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs554432740	chr3:53833210-53833211	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs550925325	chr3:53833240-53833241	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs574897462	chr3:53833250-53833251	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs34608807	chr3:53833264-53833265	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs543890044	chr3:53833350-53833351	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs4687742	chr3:53833361-53833362	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs532539454	chr3:53833372-53833373	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs570052298	chr3:53833377-53833378	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs151148814	chr3:53833379-53833380	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs537410752	chr3:53833397-53833398	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs3796348	chr3:53833398-53833399	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs140208906	chr3:53833418-53833419	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs374393815	chr3:53833475-53833476	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs549428117	chr3:53833491-53833492	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs569353356	chr3:53833502-53833503	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs182677218	chr3:53833503-53833504	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs3796349	chr3:53833509-53833510	Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs187047244	chr3:53833555-53833556	Active TSS Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs540598555	chr3:53833587-53833588	Active TSS Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs534584239	chr3:53833600-53833601	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs554750921	chr3:53833601-53833602	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs79626843	chr3:53833604-53833605	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs137958749	chr3:53833645-53833646	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs548139566	chr3:53833655-53833656	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs564764639	chr3:53833665-53833666	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs557485389	chr3:53833696-53833697	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs559696587	chr3:53833700-53833701	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs2083126	chr3:53833709-53833710	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs559451962	chr3:53833710-53833711	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs573503679	chr3:53833753-53833754	Enhancers Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs142451051	chr3:53833903-53833904	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs562319608	chr3:53833934-53833935	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs112246659	chr3:53833961-53833962	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs531002622	chr3:53833964-53833965	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs545279622	chr3:53833967-53833968	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs549512088	chr3:53834047-53834048	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Breast cancer	16397240	CNVD
Breast cancer	22032731	CNVD
Non-small cell lung cancer	20864512	CNVD
Colorectal cancer	16912164	CNVD
Non-small cell lung cancer	19010865	CNVD
Colorectal cancer	16272173	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21785460	CNVD
Neuroblastoma	17327916	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Septo-optic dysplasia	21572526	CNVD
Biliary cancer	19435499	CNVD
Squamous cell cancer	20885788	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
Ventriculomegaly	21325761	CNVD
Breast cancer	16608533	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Lung cancer	16618734	CNVD
Neuroblastoma	19686582	CNVD
Renal cell carcinoma	18765545	CNVD
Adrenocortical carcinoma	18281524	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1227 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53811400-53838600	Weak transcription	Spleen	Spleen
2	chr3:53811600-53843600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:53829200-53833800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:53829200-53853000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:53829600-53838200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:53829800-53833000	Enhancers	Fetal Heart	heart
7	chr3:53829800-53833400	Weak transcription	NHDF-Ad	bronchial
8	chr3:53830400-53833400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:53830400-53839800	Weak transcription	Lung	lung
10	chr3:53830400-53851200	Weak transcription	Fetal Brain Male	brain
11	chr3:53830600-53833000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:53830600-53833600	Weak transcription	Esophagus	oesophagus
13	chr3:53830600-53834000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:53830600-53834200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:53830600-53837400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:53830600-53837800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:53830600-53838000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:53830600-53838600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:53830600-53838600	Weak transcription	Fetal Brain Female	brain
20	chr3:53830600-53840200	Weak transcription	Brain Angular Gyrus	brain
21	chr3:53830600-53840200	Weak transcription	Pancreas	Pancrea
22	chr3:53830800-53838200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:53830800-53838800	Weak transcription	Brain Anterior Caudate	brain
24	chr3:53830800-53840200	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:53832000-53837400	Strong transcription	Fetal Lung	lung
26	chr3:53832000-53839800	Strong transcription	Fetal Intestine Large	intestine
27	chr3:53832200-53833800	Weak transcription	Fetal Stomach	stomach
28	chr3:53832200-53838800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:53832200-53839800	Strong transcription	Fetal Intestine Small	intestine
30	chr3:53832800-53833000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:53833000-53833200	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:53833000-53833600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:53833000-53838400	Weak transcription	Fetal Heart	heart
34	chr3:53833200-53833800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:53833400-53834400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:53833400-53834800	Enhancers	NHDF-Ad	bronchial
37	chr3:53833600-53834400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:53833600-53835000	Enhancers	Esophagus	oesophagus
39	chr3:53833600-53838400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:53833600-53840800	Weak transcription	Fetal Kidney	kidney
41	chr3:53833800-53834200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:53833800-53834600	Enhancers	Fetal Stomach	stomach
43	chr3:53833800-53837600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:53834000-53834400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:53834000-53834600	Enhancers	Placenta Amnion	Placenta Amnion
46	chr3:53834000-53834800	Enhancers	Fetal Muscle Leg	muscle
47	chr3:53834000-53834800	Enhancers	HSMMtube	muscle
48	chr3:53834200-53834800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:53834200-53834800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr3:53834200-53835200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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