Variant report
Variant | nsv518783 |
---|---|
Chromosome Location | chr7:14594236-14596054 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs181859364 | chr7:14595435-14595436 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs576803125 | chr7:14595456-14595457 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs545399440 | chr7:14595461-14595462 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs187277825 | chr7:14595465-14595466 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs577724207 | chr7:14595478-14595479 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs376893536 | chr7:14595495-14595496 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs58487384 | chr7:14595594-14595595 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs541496569 | chr7:14595596-14595597 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs561353815 | chr7:14595654-14595655 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs550476216 | chr7:14595671-14595672 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs141843069 | chr7:14595700-14595701 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs540612427 | chr7:14595717-14595718 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs576430296 | chr7:14595729-14595730 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs560838754 | chr7:14595737-14595738 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs532804976 | chr7:14595776-14595777 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs552611869 | chr7:14595780-14595781 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs147121530 | chr7:14595819-14595820 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs531862000 | chr7:14595828-14595829 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs111597093 | chr7:14595850-14595851 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs568197507 | chr7:14595914-14595915 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs533978797 | chr7:14595971-14595972 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs547421296 | chr7:14595987-14595988 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs192031095 | chr7:14595991-14595992 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs539315499 | chr7:14595996-14595997 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs538524168 | chr7:14596025-14596026 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs138657129 | chr7:14596028-14596029 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs12538204 | chr7:14596050-14596051 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
28 | rs2116312 | chr7:14596054-14596055 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Disease | PMID | Source |
---|---|---|
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Lynch syndrome | 18415027 | CNVD |
Biliary cancer | 19435499 | CNVD |
Cancer | 16751803 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Wilms tumour | 21544195 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Astrocytoma | 17387387 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Glioma | 21971842 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Oral cancer | 21386901 | CNVD |
colon cancer | 17210682 | CNVD |
Lung adenocarcinoma | 21810691 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Hypothalamic hamartomas | 18252217 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Peripheral t-cell lymphoma | 19118030 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Seminomas | 18059402 | CNVD |
Testicular cancer | 18059402 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Autism | 19415332 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Malaria | 21533027 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
head and neck squamous cell carcinoma | 19289630 | CNVD |
Stenocardia | 21860640 | CNVD |
Vasospasm | 21860640 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21364760 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Leukemia | 23979775 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Autism | 22495311 | CNVD |
Prostate cancer | 16573809 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Melanoma | 17363583 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Prostate cancer | 19242612 | CNVD |
Autism | 18414403 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 21858162 | CNVD |
Pleomorphic liposarcoma | 18784837 | CNVD |
Gastrointestinal stromal cancer | 20877625 | CNVD |
Cancer | 21637783 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Breast cancer | 16397240 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Breast cancer | 22522925 | CNVD |
Cancer | 20164919 | CNVD |
Colorectal cancer | 21645411 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:14595400-14601400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |