Variant report

Variant	nsv519537
Chromosome Location	chr9:25924754-25929109
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 211 )
Associated
traits (count: 116 )

Variant overlapped rSNPs/rCNVs (count:211 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs683946	chr9:25924754-25924755	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs7036217	chr9:25924789-25924790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112444901	chr9:25924794-25924795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs59832677	chr9:25924797-25924798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs371083284	chr9:25924800-25924801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs138227250	chr9:25924810-25924811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537125938	chr9:25924826-25924827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs74652576	chr9:25924894-25924895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs190813567	chr9:25924924-25924925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs538028408	chr9:25924926-25924927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs149130499	chr9:25924959-25924960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs144987919	chr9:25924968-25924969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553476022	chr9:25925004-25925005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs76162290	chr9:25925008-25925009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs538620189	chr9:25925040-25925041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs192136170	chr9:25925053-25925054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs545562486	chr9:25925054-25925055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184506453	chr9:25925065-25925066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs188403778	chr9:25925158-25925159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs145528398	chr9:25925166-25925167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs560798443	chr9:25925171-25925172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573429856	chr9:25925178-25925179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs540940776	chr9:25925197-25925198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs77876939	chr9:25925201-25925202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs565541963	chr9:25925216-25925217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs554203289	chr9:25925227-25925228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs553243846	chr9:25925233-25925234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs544705060	chr9:25925268-25925269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs572421449	chr9:25925271-25925272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs563277187	chr9:25925315-25925316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs138993078	chr9:25925316-25925317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs530559609	chr9:25925323-25925324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543015950	chr9:25925334-25925335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371298971	chr9:25925359-25925360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs78948915	chr9:25925385-25925386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs7867027	chr9:25925445-25925446	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs528231196	chr9:25925451-25925452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs544054785	chr9:25925460-25925461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs181126963	chr9:25925473-25925474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs571236546	chr9:25925477-25925478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs185617525	chr9:25925490-25925491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs562342	chr9:25925501-25925502	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs34166381	chr9:25925517-25925518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188911274	chr9:25925536-25925537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs114091355	chr9:25925553-25925554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs536353109	chr9:25925554-25925555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs116479723	chr9:25925580-25925581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs10967121	chr9:25925594-25925595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs112775341	chr9:25925596-25925597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs559171174	chr9:25925613-25925614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:116)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25923600-25926800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:25926800-25928600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:25926800-25929200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:25927000-25928000	Enhancers	Muscle Satellite Cultured Cells	--

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