Variant report

Variant	nsv519580
Chromosome Location	chr1:67282189-67294143
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:67282485-67282556	IMR90	lung:	n/a	chr1:67282528-67282541 chr1:67282528-67282541 chr1:67282528-67282541 chr1:67282530-67282541
2	CEBPB	chr1:67282436-67282636	K562	blood:	n/a	chr1:67282528-67282541 chr1:67282528-67282541 chr1:67282528-67282541 chr1:67282530-67282541
3	CTCF	chr1:67289611-67289726	GM20000	blood:	n/a	n/a
4	E2F4	chr1:67285902-67286102	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr1:67293932-67294124	MCF10A-Er-Src	breast:	n/a	n/a
6	JUN	chr1:67284802-67284903	K562	blood:	n/a	n/a
7	MYC	chr1:67291775-67291924	H1-hESC	embryonic stem cell:	n/a	n/a
8	NFYA	chr1:67285722-67285861	GM12878	blood:	n/a	n/a
9	POLR2A	chr1:67291344-67291356	MCF10A-Er-Src	breast:	n/a	n/a
10	TAF1	chr1:67290111-67290190	Hela-S3	cervix:	n/a	n/a
11	TCF7L2	chr1:67285738-67285874	HepG2	liver:	n/a	n/a
12	ZNF274	chr1:67282948-67283072	NT2-D1	testis:	n/a	n/a
13	ZNF384	chr1:67286854-67286890	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:67293404..67295635-chr1:67298470..67301604,3	K562	blood:
2	chr1:67279434..67281250-chr1:67282705..67284237,2	K562	blood:
3	chr1:67279522..67281219-chr1:67285864..67287900,2	K562	blood:

Variant related genes	Relation type
ENSG00000231080	TF binding region

Extended variants
information (count: 465 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:465 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17129472	chr1:67282189-67282190	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs568244159	chr1:67282191-67282192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs550831933	chr1:67282233-67282234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs148022397	chr1:67282251-67282252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs142551248	chr1:67282411-67282412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs397980407	chr1:67282455-67282456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs187257257	chr1:67282471-67282472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568993462	chr1:67282531-67282532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs191773289	chr1:67282534-67282535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs539814294	chr1:67282535-67282536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs184807776	chr1:67282554-67282555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs187718097	chr1:67282599-67282600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs535933809	chr1:67282638-67282639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140836277	chr1:67282689-67282690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs556492670	chr1:67282724-67282725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs112823573	chr1:67282855-67282856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs369656139	chr1:67282877-67282878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs557993051	chr1:67282914-67282915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138904683	chr1:67282934-67282935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs59546947	chr1:67282993-67282994	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs142927231	chr1:67283018-67283019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs147447648	chr1:67283027-67283028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192697179	chr1:67283054-67283055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138313873	chr1:67283057-67283058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs530689770	chr1:67283073-67283074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs185749134	chr1:67283074-67283075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs570712240	chr1:67283081-67283082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs533374876	chr1:67283099-67283100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs149576288	chr1:67283123-67283124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs559143012	chr1:67283196-67283197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184637064	chr1:67283235-67283236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs566855585	chr1:67283239-67283240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs535601539	chr1:67283278-67283279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs190660913	chr1:67283291-67283292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs569120698	chr1:67283350-67283351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs577367817	chr1:67283362-67283363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563447407	chr1:67283368-67283369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376254039	chr1:67283391-67283392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs558042022	chr1:67283400-67283401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs17495916	chr1:67283439-67283440	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs114017682	chr1:67283440-67283441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs35174358	chr1:67283450-67283451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs552723124	chr1:67283465-67283466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs572782586	chr1:67283483-67283484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs472089	chr1:67283509-67283510	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs561794108	chr1:67283539-67283540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs11589326	chr1:67283546-67283547	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs377722141	chr1:67283547-67283548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs564262134	chr1:67283590-67283591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144291067	chr1:67283600-67283601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
CNS Malformation Syndrome	17530927	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Colorectal cancer	20459617	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
abnormal development	18461090	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67276000-67293800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:67276800-67336000	Weak transcription	Aorta	Aorta
3	chr1:67280000-67318800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:67280400-67282800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:67280800-67306400	Weak transcription	Left Ventricle	heart
6	chr1:67281600-67335800	Weak transcription	Ovary	ovary
7	chr1:67288200-67299800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:67290200-67292600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:67290200-67292800	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:67290400-67290600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
11	chr1:67290600-67300400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:67292200-67293600	Enhancers	Dnd41	blood

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