Variant report

Variant	nsv519610
Chromosome Location	chr4:10153233-10159103
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:10150688..10152239-chr4:10154005..10156791,2	K562	blood:
2	chr4:10155458..10156959-chr4:10169942..10172746,2	K562	blood:
3	chr4:10147623..10149514-chr4:10156130..10157999,2	K562	blood:
4	chr4:10117458..10122489-chr4:10158161..10162241,5	MCF-7	breast:
5	chr4:10143164..10147494-chr4:10150670..10153852,4	K562	blood:
6	chr4:10156374..10159170-chr4:10457530..10459890,2	K562	blood:
7	chr4:10158544..10160312-chr4:10404691..10406060,12	K562	blood:
8	chr4:10140012..10142690-chr4:10152544..10154199,2	K562	blood:
9	chr4:10123771..10125496-chr4:10158100..10160475,2	K562	blood:
10	chr4:10146309..10149123-chr4:10156130..10158993,2	K562	blood:
11	chr4:10157043..10158718-chr4:10551029..10552565,2	K562	blood:
12	chr4:10158010..10160333-chr4:10437817..10440737,2	K562	blood:
13	chr4:10117824..10124820-chr4:10157230..10164396,13	K562	blood:
14	chr4:10156172..10158401-chr4:10178392..10179954,2	K562	blood:
15	chr4:10118098..10119029-chr4:10159089..10159710,2	MCF-7	breast:
16	chr4:10159101..10160040-chr4:10527876..10528788,2	K562	blood:
17	chr4:10151902..10153544-chr4:10159740..10162552,2	K562	blood:
18	chr4:10117542..10119864-chr4:10151862..10154716,2	MCF-7	breast:
19	chr4:10153604..10155530-chr4:10159159..10161032,2	K562	blood:
20	chr4:10159016..10159805-chr4:10405257..10406163,3	MCF-7	breast:
21	chr4:10118185..10123341-chr4:10157230..10162785,8	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR1-4	chr4:10159007-10159491	NONHSAT095472

No data

Variant related genes	Relation type
ENSG00000223086	chromatin interactions
ENSG00000178163	chromatin interactions
ENSG00000071127	chromatin interactions
ENSG00000250393	chromatin interactions

Extended variants
information (count: 451 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:451 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs737601	chr4:10153233-10153234	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs572570340	chr4:10153234-10153235	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs188443515	chr4:10153241-10153242	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs561750750	chr4:10153284-10153285	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs528865429	chr4:10153288-10153289	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs141936017	chr4:10153290-10153291	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs146313895	chr4:10153336-10153337	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs7697224	chr4:10153344-10153345	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs560890459	chr4:10153350-10153351	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs190982020	chr4:10153369-10153370	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs139586984	chr4:10153379-10153380	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs114750407	chr4:10153387-10153388	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs562173782	chr4:10153388-10153389	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs374958999	chr4:10153405-10153406	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs7697259	chr4:10153406-10153407	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs143770371	chr4:10153412-10153413	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs546757279	chr4:10153419-10153420	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs529429227	chr4:10153435-10153436	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs568477395	chr4:10153443-10153444	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs368831103	chr4:10153446-10153447	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs144320702	chr4:10153468-10153469	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs4565076	chr4:10153470-10153471	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs115545297	chr4:10153471-10153472	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs112252960	chr4:10153473-10153474	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs557902377	chr4:10153494-10153495	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs143993405	chr4:10153524-10153525	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs148661418	chr4:10153535-10153536	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs142189843	chr4:10153546-10153547	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs573625212	chr4:10153568-10153569	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs543816592	chr4:10153573-10153574	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs182892757	chr4:10153578-10153579	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs186549266	chr4:10153583-10153584	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs151215594	chr4:10153597-10153598	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs141474450	chr4:10153608-10153609	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs375366454	chr4:10153610-10153611	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs531934187	chr4:10153619-10153620	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs76533965	chr4:10153622-10153623	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs144992629	chr4:10153623-10153624	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs192602395	chr4:10153639-10153640	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs568459291	chr4:10153645-10153646	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs529297756	chr4:10153648-10153649	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs371229996	chr4:10153675-10153676	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs550665791	chr4:10153693-10153694	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs371454179	chr4:10153694-10153695	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs539771229	chr4:10153700-10153701	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs558011568	chr4:10153707-10153708	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs150059524	chr4:10153751-10153752	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs564547106	chr4:10153756-10153757	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs566762305	chr4:10153769-10153770	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs534125666	chr4:10153797-10153798	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Neuroblastoma	20406844	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10151200-10164400	Weak transcription	Right Atrium	heart
2	chr4:10152000-10153600	Enhancers	Primary B cells from cord blood	blood
3	chr4:10152200-10153800	Enhancers	Primary B cells from peripheral blood	blood
4	chr4:10152800-10153400	Enhancers	GM12878-XiMat	blood
5	chr4:10156800-10157000	Bivalent Enhancer	HSMMtube	muscle
6	chr4:10157600-10157800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:10157600-10160800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:10158000-10160800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:10158600-10160000	Enhancers	Thymus	Thymus
10	chr4:10158600-10165600	Enhancers	Fetal Thymus	thymus
11	chr4:10158800-10159800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:10158800-10161000	Enhancers	Fetal Stomach	stomach
13	chr4:10158800-10161200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr4:10159000-10160200	Enhancers	Brain Angular Gyrus	brain
15	chr4:10159000-10160800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr4:10159000-10160800	Enhancers	Brain Hippocampus Middle	brain
17	chr4:10159000-10160800	Enhancers	Brain Substantia Nigra	brain

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