Variant report

Variant	nsv520457
Chromosome Location	chr1:217102061-217102472
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2099557	chr1:217102061-217102062	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs147350007	chr1:217102067-217102068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs139399629	chr1:217102088-217102089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143294422	chr1:217102126-217102127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs543857318	chr1:217102135-217102136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs35076817	chr1:217102137-217102138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs546058987	chr1:217102145-217102146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs569776337	chr1:217102224-217102225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535507342	chr1:217102233-217102234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs147519861	chr1:217102255-217102256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs75604555	chr1:217102261-217102262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs541401639	chr1:217102267-217102268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs10458465	chr1:217102286-217102287	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs114561905	chr1:217102298-217102299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs543424008	chr1:217102309-217102310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs563311388	chr1:217102311-217102312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs529387805	chr1:217102323-217102324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs186066644	chr1:217102329-217102330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561766656	chr1:217102362-217102363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs189346492	chr1:217102369-217102370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs547421229	chr1:217102396-217102397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs181923417	chr1:217102401-217102402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs533221516	chr1:217102453-217102454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201922624	chr1:217102456-217102457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs12562202	chr1:217102472-217102473	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:92)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Liposarcoma	21253554	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
Multiple myeloma	16461302	CNVD
van der Woude syndrome	22470819	CNVD
van der Woude syndrome	20818247	CNVD
T-cell lymphomas	19863542	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hepatocellular carcinoma	18803288	CNVD
Urothelial tumor	18831757	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Medulloblastoma	16783165	CNVD
Basal cell lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Holoprosencephaly	19184110	CNVD
Breast cancer	21069454	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Mental retardation	19951919	CNVD
Non-syndromic sensorineural hearing loss	17873649	CNVD
Acute myeloid leukemia	17268525	CNVD
Lung cancer	16740712	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17053054	CNVD
Developmental delay	21147756	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
2	chr1:217093400-217104800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:217097000-217102800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:217101000-217102600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:217101000-217103000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:217101000-217103600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:217101200-217109600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:217101800-217102600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:217101800-217103200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:217102000-217107200	Weak transcription	Fetal Intestine Small	intestine

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