Variant report

Variant	nsv520747
Chromosome Location	chr16:71356135-71358937
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71321443..71323211-chr16:71358111..71360387,2	K562	blood:
2	chr16:71321458..71323211-chr16:71358349..71360387,2	K562	blood:

Variant related genes	Relation type
ENSG00000180917	chromatin interactions

Extended variants
information (count: 36 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561596282	chr16:71358132-71358133	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs573792424	chr16:71358135-71358136	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs540913226	chr16:71358160-71358161	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs34892561	chr16:71358173-71358174	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs187834020	chr16:71358266-71358267	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs533089541	chr16:71358290-71358291	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs551278333	chr16:71358323-71358324	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs114320300	chr16:71358342-71358343	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs531563902	chr16:71358402-71358403	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs550256695	chr16:71358498-71358499	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs112099487	chr16:71358503-71358504	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs577700661	chr16:71358510-71358511	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs192606434	chr16:71358523-71358524	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs141881671	chr16:71358546-71358547	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs370072331	chr16:71358547-71358548	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs140373060	chr16:71358566-71358567	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs183677500	chr16:71358578-71358579	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs145716518	chr16:71358605-71358606	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs558463548	chr16:71358606-71358607	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs569686757	chr16:71358625-71358626	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs115559441	chr16:71358630-71358631	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs188550338	chr16:71358683-71358684	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs77721542	chr16:71358772-71358773	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs193165929	chr16:71358777-71358778	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs184569983	chr16:71358807-71358808	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs151145343	chr16:71358808-71358809	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs548138915	chr16:71358809-71358810	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs544916570	chr16:71358815-71358816	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs78453861	chr16:71358824-71358825	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs76825722	chr16:71358851-71358852	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs531599833	chr16:71358852-71358853	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs117982427	chr16:71358875-71358876	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs79809585	chr16:71358892-71358893	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs563005909	chr16:71358921-71358922	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs530869115	chr16:71358928-71358929	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs2098747	chr16:71358937-71358938	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:68)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute myeloid leukemia	16864856	CNVD
Infiltrating lobular breast cancer	19191266	CNVD
T-cell lymphomas	19863542	CNVD
Hepatocellular carcinoma	16750200	CNVD
Medulloblastoma	16783165	CNVD
Neuroblastoma	21899760	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	18628472	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21509527	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Neuroblastoma	18923524	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164919	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links