Variant report

Variant	nsv520963
Chromosome Location	chr6:160637239-160638076
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPA-7	chr6:160638046-160638530	NONHSAT115898

Extended variants
information (count: 33 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs596881	chr6:160637239-160637240	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs543480345	chr6:160637250-160637251	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs11759226	chr6:160637289-160637290	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs78165183	chr6:160637329-160637330	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs76592043	chr6:160637360-160637361	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs551763540	chr6:160637391-160637392	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs187569193	chr6:160637393-160637394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs573080891	chr6:160637423-160637424	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs595853	chr6:160637485-160637486	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs551920119	chr6:160637542-160637543	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs559016604	chr6:160637546-160637547	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs529716032	chr6:160637547-160637548	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs595374	chr6:160637562-160637563	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs549543404	chr6:160637587-160637588	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs370822910	chr6:160637630-160637631	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs374992402	chr6:160637640-160637641	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs142584860	chr6:160637648-160637649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs192563638	chr6:160637668-160637669	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs146008594	chr6:160637682-160637683	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs547411207	chr6:160637698-160637699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs565939654	chr6:160637800-160637801	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs534533389	chr6:160637826-160637827	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs557913654	chr6:160637834-160637835	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs3127592	chr6:160637844-160637845	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs536104512	chr6:160637856-160637857	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs372349036	chr6:160637861-160637862	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs374500566	chr6:160637871-160637872	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs694812	chr6:160637890-160637891	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs570704084	chr6:160637923-160637924	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs184363759	chr6:160637966-160637967	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs2450975	chr6:160637975-160637976	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs3127593	chr6:160638003-160638004	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs3103353	chr6:160638076-160638077	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Breast cancer	20556506	CNVD
Hirschsprung''s Disease	21712996	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Developmental delay	19459884	CNVD
Hearing loss	19459884	CNVD
Microcephaly	19459884	CNVD
Coronary artery disease	17160897	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Multiple myeloma	17550852	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160626800-160639800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:160635800-160639800	Weak transcription	Pancreas	Pancrea
3	chr6:160636600-160638400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:160637000-160637400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:160637000-160639000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:160637200-160637400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:160637200-160637400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:160637200-160638200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:160637200-160639600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:160637200-160639800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:160637400-160642200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:160637400-160642800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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