Variant report

Variant	nsv521262
Chromosome Location	chr6:92370678-92376352
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:92374460..92376643-chr6:92383416..92386378,2	MCF-7	breast:

Extended variants
information (count: 231 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:231 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16884625	chr6:92370678-92370679	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs537825416	chr6:92370695-92370696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs545231911	chr6:92370714-92370715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140567849	chr6:92370749-92370750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs143883596	chr6:92370754-92370755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs370880745	chr6:92370757-92370758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs535791191	chr6:92370792-92370793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs578010314	chr6:92370812-92370813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs192045957	chr6:92370856-92370857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs371561336	chr6:92370863-92370864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs183939139	chr6:92370910-92370911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188436233	chr6:92370911-92370912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs193027572	chr6:92370986-92370987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs531621285	chr6:92370993-92370994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs76673977	chr6:92371031-92371032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs114031376	chr6:92371066-92371067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs184185380	chr6:92371096-92371097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs527990154	chr6:92371121-92371122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs575050374	chr6:92371137-92371138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs12202687	chr6:92371150-92371151	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs143836397	chr6:92371162-92371163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs115829895	chr6:92371180-92371181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs549096595	chr6:92371209-92371210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs568952724	chr6:92371296-92371297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs187324366	chr6:92371297-92371298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs557795863	chr6:92371319-92371320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs577664425	chr6:92371350-92371351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534143425	chr6:92371394-92371395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs115869023	chr6:92371437-92371438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs573812857	chr6:92371464-92371465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs542433616	chr6:92371467-92371468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs191727129	chr6:92371564-92371565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs562311906	chr6:92371706-92371707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs112111624	chr6:92371711-92371712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs368796541	chr6:92371732-92371733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs576147300	chr6:92371770-92371771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528486384	chr6:92371772-92371773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs183895522	chr6:92371778-92371779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs555331686	chr6:92371786-92371787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564942547	chr6:92371807-92371808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs1931818	chr6:92371810-92371811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548111231	chr6:92371818-92371819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs138887068	chr6:92371869-92371870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561409437	chr6:92371874-92371875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs1201869	chr6:92371907-92371908	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs561372200	chr6:92371918-92371919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs117245271	chr6:92371941-92371942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs570223158	chr6:92371993-92371994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs537941496	chr6:92372002-92372003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs75683326	chr6:92372090-92372091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Developmental delay	19490664	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Adrenocortical carcinoma	18281524	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Neuropathy	19664229	CNVD
Neurodevelopmental disorder	22521361	CNVD
Burkitt''s lymphoma	18698080	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92370000-92383400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:92373400-92374000	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links