Variant report

Variant	nsv521531
Chromosome Location	chr6:87338626-87340639
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:74 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1538408	chr6:87338626-87338627	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs373663075	chr6:87338646-87338647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs191567785	chr6:87338684-87338685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs563127205	chr6:87338718-87338719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs376837170	chr6:87338731-87338732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs372658112	chr6:87338761-87338762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs9344636	chr6:87338764-87338765	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs34147381	chr6:87338767-87338768	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs183707743	chr6:87338784-87338785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs559508086	chr6:87338792-87338793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs528262194	chr6:87338795-87338796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs566778553	chr6:87338797-87338798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs376439741	chr6:87338826-87338827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs35772005	chr6:87338842-87338843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs143823049	chr6:87338876-87338877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs376767240	chr6:87338898-87338899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544542363	chr6:87338988-87338989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs572709213	chr6:87339014-87339015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs143311844	chr6:87339015-87339016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs555826680	chr6:87339019-87339020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs573990338	chr6:87339022-87339023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs188733624	chr6:87339069-87339070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs373124873	chr6:87339140-87339141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs530844884	chr6:87339162-87339163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546082760	chr6:87339173-87339174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs370397944	chr6:87339194-87339195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564284662	chr6:87339218-87339219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs192830568	chr6:87339267-87339268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs546426178	chr6:87339327-87339328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs376112500	chr6:87339334-87339335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs534328925	chr6:87339364-87339365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185182067	chr6:87339370-87339371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs151291850	chr6:87339386-87339387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs565206046	chr6:87339412-87339413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs550529930	chr6:87339425-87339426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190420386	chr6:87339498-87339499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs539760946	chr6:87339520-87339521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs530810937	chr6:87339550-87339551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs557982673	chr6:87339576-87339577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs561216918	chr6:87339581-87339582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7758873	chr6:87339591-87339592	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs372736657	chr6:87339721-87339722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555613110	chr6:87339741-87339742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574056234	chr6:87339766-87339767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs368645566	chr6:87339771-87339772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs537922347	chr6:87339788-87339789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545040073	chr6:87339859-87339860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556533807	chr6:87339896-87339897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs140518114	chr6:87339931-87339932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs181688101	chr6:87339932-87339933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD
Developmental delay	19490664	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87338400-87340200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:87340200-87340600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links