Variant report

Variant	nsv521540
Chromosome Location	chr11:26091970-26095357
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:128 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11029130	chr11:26091970-26091971	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs578068872	chr11:26091972-26091973	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs531350164	chr11:26092011-26092012	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs189885574	chr11:26092016-26092017	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs549822331	chr11:26092032-26092033	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs148306716	chr11:26092093-26092094	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs115362224	chr11:26092113-26092114	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs561266701	chr11:26092118-26092119	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs531875337	chr11:26092123-26092124	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs559622911	chr11:26092145-26092146	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs551238747	chr11:26092155-26092156	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs79372484	chr11:26092188-26092189	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs562342623	chr11:26092189-26092190	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs533088674	chr11:26092301-26092302	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs545139461	chr11:26092335-26092336	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs551196478	chr11:26092354-26092355	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs543835963	chr11:26092359-26092360	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs534001262	chr11:26092369-26092370	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs182062488	chr11:26092393-26092394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs11029131	chr11:26092395-26092396	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs141407317	chr11:26092402-26092403	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs556566112	chr11:26092411-26092412	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs577946072	chr11:26092412-26092413	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs369742824	chr11:26092431-26092432	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs187759872	chr11:26092483-26092484	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs530764599	chr11:26092505-26092506	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs572179198	chr11:26092515-26092516	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs542827502	chr11:26092556-26092557	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs549671386	chr11:26092631-26092632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192376010	chr11:26092660-26092661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs185341179	chr11:26092828-26092829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs543750268	chr11:26092845-26092846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs77665442	chr11:26092852-26092853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs374650452	chr11:26092854-26092855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs79701009	chr11:26092935-26092936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs568002793	chr11:26092936-26092937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11029132	chr11:26092959-26092960	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs79335323	chr11:26092966-26092967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs527367375	chr11:26092991-26092992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549225784	chr11:26093011-26093012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs567343836	chr11:26093015-26093016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs1552582	chr11:26093041-26093042	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs549813513	chr11:26093068-26093069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs571472189	chr11:26093115-26093116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs74902602	chr11:26093120-26093121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11029133	chr11:26093147-26093148	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs539534152	chr11:26093149-26093150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs143890603	chr11:26093180-26093181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs536344663	chr11:26093187-26093188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs55850236	chr11:26093201-26093202	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Schizophrenia	23813976	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26082400-26094200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:26091000-26094000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:26091600-26092600	Enhancers	Fetal Kidney	kidney
4	chr11:26092600-26094200	Weak transcription	Fetal Kidney	kidney
5	chr11:26094000-26095000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:26094200-26094600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:26094200-26094800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:26094200-26096000	Enhancers	Fetal Kidney	kidney
9	chr11:26094400-26094600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:26094600-26099800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:26094600-26100000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:26095000-26096600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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