Variant report

Variant	nsv521564
Chromosome Location	chr9:25659613-25666291
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:25658961..25661673-chr9:25677638..25679152,2	MCF-7	breast:
2	chr9:25664021..25666834-chr9:25677029..25679004,2	MCF-7	breast:
3	chr9:25662809..25665496-chr9:25677024..25678546,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198680	chromatin interactions

Extended variants
information (count: 208 )
Associated
traits (count: 118 )

Variant overlapped rSNPs/rCNVs (count:208 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10124903	chr9:25659613-25659614	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs186923368	chr9:25659617-25659618	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs10124907	chr9:25659637-25659638	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	disease
4	rs10118834	chr9:25659660-25659661	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs562532401	chr9:25659686-25659687	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs10124933	chr9:25659718-25659719	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs548488661	chr9:25659729-25659730	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs190817418	chr9:25659744-25659745	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs527605995	chr9:25659757-25659758	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs552561152	chr9:25659760-25659761	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs147937397	chr9:25659777-25659778	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs571658146	chr9:25659794-25659795	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs10967031	chr9:25659800-25659801	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs376458167	chr9:25659805-25659806	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs74618371	chr9:25659809-25659810	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs183446601	chr9:25659847-25659848	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs370128620	chr9:25659850-25659851	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs78792452	chr9:25659853-25659854	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs553959491	chr9:25659855-25659856	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs185044841	chr9:25659862-25659863	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs76455798	chr9:25659897-25659898	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs80342440	chr9:25659900-25659901	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs386733802	chr9:25659925-25659926	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs77607812	chr9:25659956-25659957	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs78451091	chr9:25659960-25659961	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs529830006	chr9:25659970-25659971	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs144264905	chr9:25660021-25660022	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs77501138	chr9:25660058-25660059	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs151170296	chr9:25660072-25660073	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs552487465	chr9:25660091-25660092	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs117626953	chr9:25660120-25660121	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs10114998	chr9:25660179-25660180	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs571839543	chr9:25660180-25660181	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs140091590	chr9:25660202-25660203	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs527642595	chr9:25660203-25660204	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs568504817	chr9:25660207-25660208	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs10118251	chr9:25660228-25660229	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs539022040	chr9:25660290-25660291	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs201261816	chr9:25660295-25660296	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs73644557	chr9:25660304-25660305	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs182790526	chr9:25660308-25660309	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs72708997	chr9:25660333-25660334	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs34583512	chr9:25660353-25660354	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs565860709	chr9:25660359-25660360	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs372767358	chr9:25660366-25660367	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs576748837	chr9:25660401-25660402	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs547405881	chr9:25660454-25660455	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs201863109	chr9:25660513-25660514	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs139330150	chr9:25660514-25660515	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs376912048	chr9:25660515-25660516	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:118)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25654600-25660000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:25665400-25665800	Active TSS	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links