Variant report

Variant	nsv521799
Chromosome Location	chr16:82399758-82401055
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82400970..82402265-chr16:82489997..82490801,4	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:85 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9934649	chr16:82399758-82399759	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs539186072	chr16:82399782-82399783	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs372222171	chr16:82399788-82399789	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs375285408	chr16:82399798-82399799	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs7187288	chr16:82399799-82399800	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs534713517	chr16:82399850-82399851	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs180981430	chr16:82399881-82399882	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs538900911	chr16:82399905-82399906	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs200064991	chr16:82399907-82399908	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs55787511	chr16:82399931-82399932	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs574420553	chr16:82399946-82399947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs578172586	chr16:82399955-82399956	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs545730628	chr16:82399960-82399961	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs372337061	chr16:82399979-82399980	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs114577978	chr16:82400005-82400006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572690002	chr16:82400016-82400017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs184869908	chr16:82400033-82400034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561391271	chr16:82400034-82400035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs142256207	chr16:82400054-82400055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74435514	chr16:82400058-82400059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs565307477	chr16:82400081-82400082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532299040	chr16:82400107-82400108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547327916	chr16:82400114-82400115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs565497950	chr16:82400124-82400125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs17809977	chr16:82400125-82400126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189753536	chr16:82400130-82400131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs11640953	chr16:82400134-82400135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs367664808	chr16:82400172-82400173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs181374842	chr16:82400179-82400180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs537179137	chr16:82400180-82400181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558265352	chr16:82400195-82400196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576973743	chr16:82400208-82400209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs539300813	chr16:82400220-82400221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs7199482	chr16:82400227-82400228	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs150830732	chr16:82400263-82400264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs55709211	chr16:82400276-82400277	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs555234521	chr16:82400287-82400288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576435660	chr16:82400293-82400294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185953211	chr16:82400330-82400331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs190761241	chr16:82400352-82400353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565123041	chr16:82400370-82400371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532546420	chr16:82400374-82400375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs540881006	chr16:82400407-82400408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181832858	chr16:82400415-82400416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs78297365	chr16:82400432-82400433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs569880128	chr16:82400448-82400449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs561642705	chr16:82400450-82400451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs531331583	chr16:82400469-82400470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs2550867	chr16:82400470-82400471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530512226	chr16:82400476-82400477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Autism	21865298	CNVD
Myelofibrosis	22110671	CNVD
Non-small cell lung cancer	21829676	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16461572	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82393200-82401800	Weak transcription	Gastric	stomach
2	chr16:82399600-82400000	Enhancers	HMEC	breast
3	chr16:82400600-82400800	Weak transcription	Aorta	Aorta
4	chr16:82400800-82401000	ZNF genes & repeats	Aorta	Aorta
5	chr16:82401000-82401200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:82401000-82402800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links