Variant report

Variant	nsv522905
Chromosome Location	chr6:166884765-166895934
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:166893774..166896880-chr6:166897771..166899718,3	MCF-7	breast:
2	chr6:166877740..166880123-chr6:166885130..166887516,2	K562	blood:
3	chr6:166881013..166882996-chr6:166884544..166886077,2	K562	blood:
4	chr6:166892327..166894616-chr6:166897228..166898880,2	K562	blood:

Variant related genes	Relation type
ENSG00000232082	chromatin interactions

Extended variants
information (count: 511 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:511 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12199759	chr6:166884765-166884766	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs34038573	chr6:166884799-166884800	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs573907532	chr6:166884800-166884801	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs188447844	chr6:166884825-166884826	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs562483951	chr6:166884829-166884830	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs577786335	chr6:166884830-166884831	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs2235283	chr6:166884848-166884849	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs112333748	chr6:166884877-166884878	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs527874558	chr6:166884901-166884902	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs573677537	chr6:166884958-166884959	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs561405378	chr6:166884993-166884994	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs532045557	chr6:166885021-166885022	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs549876950	chr6:166885029-166885030	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs78413643	chr6:166885030-166885031	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs538704988	chr6:166885043-166885044	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs138940150	chr6:166885055-166885056	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs565882680	chr6:166885061-166885062	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs149413855	chr6:166885087-166885088	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs144776106	chr6:166885096-166885097	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs573819882	chr6:166885097-166885098	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs538164448	chr6:166885104-166885105	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs556149589	chr6:166885108-166885109	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs192562480	chr6:166885125-166885126	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs545066041	chr6:166885130-166885131	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs116369551	chr6:166885143-166885144	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs572137432	chr6:166885156-166885157	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs148540560	chr6:166885172-166885173	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs115775113	chr6:166885194-166885195	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs571174479	chr6:166885226-166885227	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs531863498	chr6:166885235-166885236	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs200417640	chr6:166885303-166885304	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs72555472	chr6:166885305-166885306	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs3215468	chr6:166885306-166885307	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs67969446	chr6:166885307-166885308	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs368341618	chr6:166885330-166885331	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs550069909	chr6:166885342-166885343	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs550427004	chr6:166885347-166885348	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs565278142	chr6:166885350-166885351	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs532367105	chr6:166885385-166885386	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs570391319	chr6:166885388-166885389	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs73033745	chr6:166885393-166885394	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs182871006	chr6:166885404-166885405	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs530228483	chr6:166885499-166885500	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs548877997	chr6:166885506-166885507	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs536038302	chr6:166885510-166885511	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs567458980	chr6:166885527-166885528	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs186678315	chr6:166885555-166885556	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs192568952	chr6:166885563-166885564	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs554290534	chr6:166885603-166885604	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs143895734	chr6:166885638-166885639	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ependymoma	20639864	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:315 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:166862400-166900600	Weak transcription	Primary T cells from cord blood	blood
4	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:166863600-166900200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:166863600-166902000	Weak transcription	Small Intestine	intestine
7	chr6:166864800-166899800	Weak transcription	Esophagus	oesophagus
8	chr6:166867400-166892800	Weak transcription	Fetal Brain Male	brain
9	chr6:166867600-166900000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:166870400-166898400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:166871000-166901400	Weak transcription	Stomach Mucosa	stomach
12	chr6:166872000-166900400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:166872200-166900400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:166873000-166902800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:166874200-166885200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:166874800-166903000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:166875000-166900800	Weak transcription	Fetal Heart	heart
18	chr6:166875400-166885400	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:166875800-166887000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:166875800-166894000	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:166876000-166885000	Strong transcription	Right Ventricle	heart
22	chr6:166876000-166888800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:166876000-166901400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:166876200-166886600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:166877000-166885200	Strong transcription	Spleen	Spleen
26	chr6:166877200-166904400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:166877200-166908800	Weak transcription	Colonic Mucosa	Colon
28	chr6:166877600-166885200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:166878200-166902000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:166879000-166900600	Weak transcription	Primary B cells from cord blood	blood
31	chr6:166879800-166891400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:166880200-166887800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:166880200-166888400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:166880200-166890600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:166880200-166892200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:166880200-166900000	Weak transcription	Fetal Intestine Large	intestine
37	chr6:166880400-166887600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:166880400-166887600	Weak transcription	HSMMtube	muscle
39	chr6:166880400-166887800	Weak transcription	HSMM	muscle
40	chr6:166880400-166900000	Weak transcription	Fetal Lung	lung
41	chr6:166880600-166885600	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:166880600-166887000	Strong transcription	Fetal Stomach	stomach
43	chr6:166880600-166895800	Weak transcription	NHDF-Ad	bronchial
44	chr6:166880600-166899800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:166880800-166893600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:166880800-166904400	Weak transcription	NH-A	brain
47	chr6:166881000-166887000	Strong transcription	Left Ventricle	heart
48	chr6:166881000-166888000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:166881400-166886600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:166881400-166904400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links