Variant report

Variant	nsv523126
Chromosome Location	chr8:107817656-107823148
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107823015..107825825-chr8:107828969..107830508,2	MCF-7	breast:

Extended variants
information (count: 200 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:200 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6999688	chr8:107817656-107817657	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs143995821	chr8:107817683-107817684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs558899310	chr8:107817784-107817785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs532796195	chr8:107817805-107817806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs2449836	chr8:107817846-107817847	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs564846441	chr8:107817871-107817872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs532198918	chr8:107817908-107817909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs552360582	chr8:107817932-107817933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs559356510	chr8:107817942-107817943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs531913699	chr8:107818017-107818018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs573791065	chr8:107818034-107818035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs550308412	chr8:107818094-107818095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2513857	chr8:107818114-107818115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560385031	chr8:107818208-107818209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562167283	chr8:107818215-107818216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144877123	chr8:107818223-107818224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs547945771	chr8:107818237-107818238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs36008761	chr8:107818243-107818244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs528409845	chr8:107818249-107818250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs566070912	chr8:107818313-107818314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs368688034	chr8:107818339-107818340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs543100039	chr8:107818340-107818341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs551490587	chr8:107818347-107818348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs569894018	chr8:107818348-107818349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs183647432	chr8:107818355-107818356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs555507637	chr8:107818537-107818538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs573526845	chr8:107818543-107818544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs567641986	chr8:107818569-107818570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs148644902	chr8:107818570-107818571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552690064	chr8:107818583-107818584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs367744386	chr8:107818619-107818620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs370579616	chr8:107818643-107818644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs536688532	chr8:107818655-107818656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186615528	chr8:107818684-107818685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs374042245	chr8:107818687-107818688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs73702426	chr8:107818759-107818760	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs563145601	chr8:107818763-107818764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576649090	chr8:107818767-107818768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543790062	chr8:107818790-107818791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs185593414	chr8:107818833-107818834	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs529553669	chr8:107818842-107818843	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs547911494	chr8:107818875-107818876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs559841817	chr8:107818899-107818900	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs190256691	chr8:107818915-107818916	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs549995329	chr8:107818933-107818934	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs569970024	chr8:107819009-107819010	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs182073646	chr8:107819024-107819025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs549039355	chr8:107819043-107819044	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs567112235	chr8:107819051-107819052	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs563019883	chr8:107819062-107819063	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Gastric cancer	17908304	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
Colorectal cancer	16774939	CNVD
Autosomal-dominant progressive external ophthalmoplegia	19664747	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Multiple myeloma	16461302	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Breast cancer	21364760	CNVD
Gastric cancer	22539939	CNVD
Non-small cell lung cancer	19010865	CNVD
Colorectal cancer	21645411	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107809600-107821000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107814800-107820400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr8:107814800-107823400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:107815400-107820200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr8:107818800-107819200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:107818800-107819200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:107820000-107821600	Enhancers	Adipose Nuclei	Adipose
8	chr8:107820200-107820400	Enhancers	HSMMtube	muscle
9	chr8:107820200-107821200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:107820400-107821200	Enhancers	Fetal Heart	heart
11	chr8:107820400-107821200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr8:107820600-107821200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:107821000-107821200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:107821200-107822800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:107821200-107825400	Weak transcription	Fetal Heart	heart
16	chr8:107821600-107822800	Weak transcription	Adipose Nuclei	Adipose
17	chr8:107822800-107823400	Enhancers	Adipose Nuclei	Adipose
18	chr8:107822800-107826000	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links