Variant report

Variant	nsv523321
Chromosome Location	chr7:15108184-15114140
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC006035.2-4	chr7:15107930-15108276	XLOC_005990

Extended variants
information (count: 67 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:67 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12386767	chr7:15108184-15108185	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs180861480	chr7:15108203-15108204	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs560264445	chr7:15108223-15108224	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs576879054	chr7:15112805-15112806	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs186322386	chr7:15112829-15112830	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs190975949	chr7:15112833-15112834	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs184012851	chr7:15112835-15112836	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs187857717	chr7:15112896-15112897	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs56144427	chr7:15112917-15112918	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs561494788	chr7:15112961-15112962	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs530151664	chr7:15112971-15112972	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs190948636	chr7:15113007-15113008	Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs566607776	chr7:15113027-15113028	Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs532403027	chr7:15113038-15113039	Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs141860527	chr7:15113044-15113045	Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs552530654	chr7:15113051-15113052	Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs28650003	chr7:15113078-15113079	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs34414651	chr7:15113085-15113086	Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs183116473	chr7:15113088-15113089	Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs73681325	chr7:15113094-15113095	Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs546784939	chr7:15113107-15113108	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs75721854	chr7:15113122-15113123	Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs560580414	chr7:15113131-15113132	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs141042827	chr7:15113151-15113152	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs533895442	chr7:15113177-15113178	Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs553944364	chr7:15113228-15113229	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs144892046	chr7:15113229-15113230	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs545528866	chr7:15113233-15113234	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs150933629	chr7:15113245-15113246	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs575859301	chr7:15113282-15113283	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs116079644	chr7:15113293-15113294	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs114679197	chr7:15113332-15113333	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs111874110	chr7:15113337-15113338	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs530261152	chr7:15113340-15113341	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs540409123	chr7:15113353-15113354	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs560252058	chr7:15113357-15113358	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs549496578	chr7:15113361-15113362	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs552289854	chr7:15113374-15113375	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs368224972	chr7:15113375-15113376	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs115609582	chr7:15113384-15113385	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs10479942	chr7:15113387-15113388	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs187036327	chr7:15113391-15113392	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs191983476	chr7:15113429-15113430	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs373894923	chr7:15113440-15113441	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs376163093	chr7:15113447-15113448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs367759709	chr7:15113456-15113457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs75698514	chr7:15113469-15113470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs184273312	chr7:15113481-15113482	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs139437099	chr7:15113489-15113490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs543357442	chr7:15113499-15113500	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Myelofibrosis	22110671	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15112800-15113400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:15113200-15113800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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