Variant report

Variant	nsv523769
Chromosome Location	chr15:54434868-54437876
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:128 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12591326	chr15:54434868-54434869	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs185557207	chr15:54434884-54434885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541108642	chr15:54434898-54434899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560765829	chr15:54434913-54434914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs529680254	chr15:54434950-54434951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs189576225	chr15:54434964-54434965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs563549376	chr15:54435001-54435002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs547947699	chr15:54435116-54435117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566156886	chr15:54435123-54435124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs532195364	chr15:54435148-54435149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs201849894	chr15:54435189-54435190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs371199628	chr15:54435216-54435217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs551918573	chr15:54435217-54435218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs374238210	chr15:54435237-54435238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs367764803	chr15:54435255-54435256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs142354786	chr15:54435262-54435263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371939168	chr15:54435268-54435269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs376869458	chr15:54435276-54435277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548654054	chr15:54435280-54435281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs368165178	chr15:54435287-54435288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs568372457	chr15:54435309-54435310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs537407175	chr15:54435347-54435348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs557392629	chr15:54435396-54435397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs568868305	chr15:54435411-54435412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs117756813	chr15:54435429-54435430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs182139976	chr15:54435435-54435436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs1897069	chr15:54435446-54435447	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs548582269	chr15:54435456-54435457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs151271431	chr15:54435503-54435504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs376041103	chr15:54435518-54435519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs370129185	chr15:54435533-54435534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs541165664	chr15:54435549-54435550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs186742122	chr15:54435596-54435597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs140469570	chr15:54435597-54435598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs550586011	chr15:54435641-54435642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs66664315	chr15:54435644-54435645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs10048013	chr15:54435697-54435698	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs568032176	chr15:54435718-54435719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs563450021	chr15:54435725-54435726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs537357436	chr15:54435744-54435745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532307400	chr15:54435751-54435752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs193091558	chr15:54435757-54435758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs372442026	chr15:54435766-54435767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs73405642	chr15:54435821-54435822	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs370037627	chr15:54435844-54435845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs76062035	chr15:54435865-54435866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373493676	chr15:54435870-54435871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs145124708	chr15:54435949-54435950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs372643939	chr15:54435951-54435952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs568515019	chr15:54435962-54435963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54432200-54451200	Weak transcription	Fetal Lung	lung

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