Variant report

Variant	nsv523823
Chromosome Location	chr9:116782921-116782985
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116778931..116781819-chr9:116782880..116785170,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10982035	chr9:116782921-116782922	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs111818545	chr9:116782938-116782939	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs2163575	chr9:116782943-116782944	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs539412072	chr9:116782947-116782948	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs2116406	chr9:116782985-116782986	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:61)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Lung cancer	19147751	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Bladder cancer	21909424	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	21509527	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cervical cancer	16585170	CNVD
Ependymoma	19289631	CNVD
Melanoma	17363583	CNVD

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:116756800-116783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:116757000-116783400	Weak transcription	Small Intestine	intestine
5	chr9:116764600-116797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:116765000-116783200	Weak transcription	NHEK	skin
7	chr9:116765800-116784400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:116766000-116784800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:116766000-116792600	Weak transcription	Stomach Mucosa	stomach
10	chr9:116766000-116798000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:116766200-116799000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:116767200-116785800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:116768400-116794600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:116768800-116784800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:116769400-116790400	Weak transcription	Right Ventricle	heart
17	chr9:116773600-116809200	Weak transcription	Fetal Heart	heart
18	chr9:116774000-116791200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:116774000-116791200	Weak transcription	Fetal Brain Male	brain
20	chr9:116774200-116783800	Weak transcription	HMEC	breast
21	chr9:116774200-116798400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:116774600-116790400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:116775200-116783400	Weak transcription	NH-A	brain
24	chr9:116775400-116784800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:116775600-116783000	Strong transcription	Fetal Lung	lung
26	chr9:116776200-116789800	Strong transcription	HUVEC	blood vessel
27	chr9:116777800-116785000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:116778000-116785200	Strong transcription	NHDF-Ad	bronchial
29	chr9:116778400-116783000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:116778400-116783000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:116778400-116785000	Strong transcription	Primary hematopoietic stem cells	blood
32	chr9:116778400-116785400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:116778600-116783400	Strong transcription	Adipose Nuclei	Adipose
34	chr9:116779000-116783000	Strong transcription	Liver	Liver
35	chr9:116780200-116798600	Weak transcription	Colonic Mucosa	Colon
36	chr9:116780400-116783800	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:116780600-116796800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:116780800-116784800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr9:116780800-116786800	Weak transcription	Left Ventricle	heart
40	chr9:116780800-116788000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:116780800-116788000	Weak transcription	Spleen	Spleen
42	chr9:116780800-116791000	Weak transcription	Gastric	stomach
43	chr9:116780800-116791000	Weak transcription	Pancreas	Pancrea
44	chr9:116780800-116791200	Weak transcription	Thymus	Thymus
45	chr9:116780800-116792800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:116780800-116796800	Weak transcription	Brain Angular Gyrus	brain
47	chr9:116780800-116798000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr9:116780800-116800200	Weak transcription	Esophagus	oesophagus
49	chr9:116781000-116783600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr9:116781000-116784000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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