Variant report

Variant	nsv523890
Chromosome Location	chr9:16210610-16211712
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:59 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10962333	chr9:16210610-16210611	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs190804395	chr9:16210619-16210620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs368634832	chr9:16210704-16210705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs181872458	chr9:16210708-16210709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs537663180	chr9:16210731-16210732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs12001148	chr9:16210815-16210816	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs577634027	chr9:16210818-16210819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs541776517	chr9:16210838-16210839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs73423667	chr9:16210856-16210857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs10123661	chr9:16210867-16210868	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs368150753	chr9:16210974-16210975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs541956937	chr9:16210983-16210984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs34618195	chr9:16210985-16210986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs564369577	chr9:16210991-16210992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138023633	chr9:16211012-16211013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs370942690	chr9:16211019-16211020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572923772	chr9:16211031-16211032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs141574519	chr9:16211061-16211062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs114085170	chr9:16211078-16211079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs10118247	chr9:16211084-16211085	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs377713418	chr9:16211086-16211087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532251560	chr9:16211097-16211098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547321925	chr9:16211117-16211118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs386733075	chr9:16211135-16211136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112689735	chr9:16211136-16211137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs200667799	chr9:16211137-16211138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547938239	chr9:16211165-16211166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs565987016	chr9:16211185-16211186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs372502541	chr9:16211198-16211199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs569749294	chr9:16211226-16211227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs76924354	chr9:16211237-16211238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs559173669	chr9:16211242-16211243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs59422401	chr9:16211271-16211272	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs534362643	chr9:16211272-16211273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs147047185	chr9:16211275-16211276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs569598429	chr9:16211284-16211285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35248961	chr9:16211285-16211286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs397958365	chr9:16211295-16211296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs397967141	chr9:16211296-16211297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs115078522	chr9:16211312-16211313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs9407719	chr9:16211320-16211321	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs4961671	chr9:16211366-16211367	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs115972621	chr9:16211378-16211379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs191477865	chr9:16211386-16211387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs4961672	chr9:16211392-16211393	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs540923902	chr9:16211411-16211412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs73423669	chr9:16211448-16211449	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs542520197	chr9:16211459-16211460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs529623916	chr9:16211475-16211476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs373368401	chr9:16211525-16211526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21611746	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16203600-16213600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:16204400-16213600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:16204600-16213200	Weak transcription	NHLF	lung
4	chr9:16204600-16213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16206000-16213600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16207400-16213600	Weak transcription	Psoas Muscle	Psoas
7	chr9:16207400-16213600	Weak transcription	Right Atrium	heart
8	chr9:16207400-16214400	Weak transcription	Fetal Kidney	kidney
9	chr9:16207600-16212000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:16207800-16212200	Weak transcription	Ovary	ovary
11	chr9:16208000-16213200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:16211600-16215200	Enhancers	Fetal Lung	lung
13	chr9:16211600-16216600	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links