Variant report

Variant	nsv524017
Chromosome Location	chr7:10866687-10875894
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 254 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:254 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12667569	chr7:10866687-10866688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs370985778	chr7:10866714-10866715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534282122	chr7:10866734-10866735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577081539	chr7:10866763-10866764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs184551766	chr7:10866781-10866782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs190246638	chr7:10866836-10866837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs531833188	chr7:10866861-10866862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs541901766	chr7:10866877-10866878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs562100774	chr7:10866889-10866890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs199727114	chr7:10866892-10866893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs540706263	chr7:10866901-10866902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs62440605	chr7:10866904-10866905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs528006828	chr7:10866923-10866924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs548743623	chr7:10866969-10866970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs76291117	chr7:10866975-10866976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs374636765	chr7:10867058-10867059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs568536568	chr7:10867099-10867100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570727793	chr7:10867117-10867118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs533309392	chr7:10867175-10867176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551859925	chr7:10867195-10867196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs568906263	chr7:10867209-10867210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs149678093	chr7:10867216-10867217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs111400392	chr7:10867226-10867227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs146658359	chr7:10867259-10867260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs117013308	chr7:10867271-10867272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs534371849	chr7:10867300-10867301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs35013232	chr7:10867307-10867308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534100124	chr7:10867336-10867337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs554072607	chr7:10867394-10867395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs577117411	chr7:10867427-10867428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs545970936	chr7:10867458-10867459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs556316968	chr7:10867460-10867461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs34688314	chr7:10867466-10867467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs576497071	chr7:10867547-10867548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs542289774	chr7:10867557-10867558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs561964866	chr7:10867584-10867585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs182317181	chr7:10867595-10867596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187321913	chr7:10867618-10867619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs375940206	chr7:10867670-10867671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs118027292	chr7:10867710-10867711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs141461236	chr7:10867721-10867722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs533443158	chr7:10867781-10867782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs368639193	chr7:10867787-10867788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188922462	chr7:10867803-10867804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs73057499	chr7:10867804-10867805	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs548238375	chr7:10867848-10867849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs35646125	chr7:10867931-10867932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs377716222	chr7:10868001-10868002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs533726207	chr7:10868002-10868003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs552542132	chr7:10868027-10868028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	22286061	CNVD
Non-small cell lung cancer	21829676	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Medulloblastoma	17653508	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:10865600-10871800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:10875000-10875600	Active TSS	Brain Anterior Caudate	brain

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