Variant report

Variant	nsv524360
Chromosome Location	chr10:110452911-110460232
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 230 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:230 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553323887	chr10:110453809-110453810	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs145546740	chr10:110453828-110453829	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs545685355	chr10:110453846-110453847	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs147758337	chr10:110453879-110453880	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs575671661	chr10:110453887-110453888	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs74619377	chr10:110453894-110453895	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs561432609	chr10:110453905-110453906	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs183629415	chr10:110453919-110453920	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs532515515	chr10:110453987-110453988	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs372140186	chr10:110455427-110455428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs368824035	chr10:110455446-110455447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs377080869	chr10:110455463-110455464	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs186565697	chr10:110455525-110455526	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs11591344	chr10:110455560-110455561	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs576903251	chr10:110455570-110455571	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs545862853	chr10:110455590-110455591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs76916645	chr10:110455604-110455605	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs576112315	chr10:110455613-110455614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs542008792	chr10:110455666-110455667	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs375881658	chr10:110455679-110455680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs118126662	chr10:110455737-110455738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs540656614	chr10:110455747-110455748	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs189625247	chr10:110455781-110455782	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs141388715	chr10:110455818-110455819	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs182982637	chr10:110455827-110455828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs188734485	chr10:110455877-110455878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs12240929	chr10:110455888-110455889	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs80299142	chr10:110455910-110455911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs150862613	chr10:110455954-110455955	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs117776775	chr10:110455984-110455985	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs193297080	chr10:110456012-110456013	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs201695470	chr10:110456045-110456046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs10736198	chr10:110456048-110456049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs570476295	chr10:110456067-110456068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs184977067	chr10:110456077-110456078	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs199963500	chr10:110456086-110456087	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs61155002	chr10:110456089-110456090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs374493858	chr10:110456092-110456093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs199627391	chr10:110456095-110456096	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs576524194	chr10:110456116-110456117	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs535284775	chr10:110456141-110456142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs11591457	chr10:110456250-110456251	Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs551524834	chr10:110456301-110456302	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs572226162	chr10:110456386-110456387	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs74372787	chr10:110456387-110456388	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs187537644	chr10:110456463-110456464	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs191658008	chr10:110456508-110456509	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs12264466	chr10:110456511-110456512	Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs563234953	chr10:110456515-110456516	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs528952187	chr10:110456517-110456518	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110453800-110454000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:110453800-110454000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:110455400-110456200	Enhancers	GM12878-XiMat	blood
4	chr10:110456200-110457600	Flanking Active TSS	GM12878-XiMat	blood
5	chr10:110456400-110457200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:110457200-110457400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:110457600-110457800	Enhancers	GM12878-XiMat	blood
8	chr10:110457800-110472400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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