Variant report

Variant	nsv524734
Chromosome Location	chr19:57062073-57063640
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF470-2	chr19:57061815-57062398	NONHSAT068174

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZFP28	hsa-miR-335-5p	chr19:57063009-57063035

Extended variants
information (count: 53 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs379214	chr19:57062073-57062074	ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs536865727	chr19:57062103-57062104	ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs370943788	chr19:57062125-57062126	ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs562814760	chr19:57062145-57062146	ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs116380690	chr19:57062147-57062148	ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs371363406	chr19:57062186-57062187	ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs568407761	chr19:57062198-57062199	ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs35974401	chr19:57062200-57062201	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs188773240	chr19:57062206-57062207	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs554296953	chr19:57062255-57062256	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs570880486	chr19:57062302-57062303	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs73616015	chr19:57062306-57062307	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs556681132	chr19:57062308-57062309	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs576533900	chr19:57062346-57062347	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs542240169	chr19:57062347-57062348	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs114659850	chr19:57062353-57062354	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs145860633	chr19:57062373-57062374	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs181114763	chr19:57062410-57062411	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs560263637	chr19:57062444-57062445	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs75156353	chr19:57062522-57062523	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs34656034	chr19:57062523-57062524	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs373345367	chr19:57062543-57062544	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs149009403	chr19:57062606-57062607	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs562219677	chr19:57062629-57062630	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs67585376	chr19:57062647-57062648	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs573530303	chr19:57062660-57062661	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs536293128	chr19:57062708-57062709	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs547746418	chr19:57062718-57062719	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs185324308	chr19:57062776-57062777	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs562249501	chr19:57062794-57062795	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs527959741	chr19:57062803-57062804	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs147075767	chr19:57062831-57062832	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs190150481	chr19:57062866-57062867	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs539624168	chr19:57062869-57062870	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs138492112	chr19:57062877-57062878	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs375980115	chr19:57062927-57062928	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs570154212	chr19:57063006-57063007	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113555455	chr19:57063010-57063011	Weak transcription ZNF genes & repeats Strong transcription	miRNA target site	1 gene(s)	Overlapped CNVs	n/a
39	rs181874714	chr19:57063038-57063039	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs76017965	chr19:57063056-57063057	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs367686275	chr19:57063068-57063069	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs541016590	chr19:57063112-57063113	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555750694	chr19:57063133-57063134	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574665251	chr19:57063135-57063136	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs186385552	chr19:57063140-57063141	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553765110	chr19:57063151-57063152	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs190754754	chr19:57063220-57063221	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545588314	chr19:57063381-57063382	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs557818478	chr19:57063437-57063438	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs562255289	chr19:57063582-57063583	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:176 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:57047400-57077800	ZNF genes & repeats	Liver	Liver
2	chr19:57050600-57062800	ZNF genes & repeats	A549	lung
3	chr19:57050800-57063000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr19:57050800-57067000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:57051200-57062600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr19:57051200-57068000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:57051400-57063000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr19:57051400-57068000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:57051400-57068000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr19:57051400-57068000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr19:57051400-57068000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:57051400-57070600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:57051600-57067200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:57051600-57078000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:57051800-57066600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr19:57051800-57067000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr19:57052200-57063000	ZNF genes & repeats	Fetal Brain Female	brain
18	chr19:57052200-57070200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr19:57052400-57062600	ZNF genes & repeats	Ovary	ovary
20	chr19:57052400-57068000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr19:57052600-57062800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
22	chr19:57052600-57063000	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr19:57052600-57067800	ZNF genes & repeats	Dnd41	blood
24	chr19:57053800-57063000	ZNF genes & repeats	Fetal Lung	lung
25	chr19:57054000-57068000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr19:57054800-57062400	ZNF genes & repeats	Aorta	Aorta
27	chr19:57054800-57077800	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr19:57055000-57067200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
29	chr19:57055000-57070800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr19:57055200-57063000	ZNF genes & repeats	Brain Hippocampus Middle	brain
31	chr19:57055200-57063000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
32	chr19:57055200-57068000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr19:57056200-57063000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr19:57056200-57068000	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr19:57057000-57062600	ZNF genes & repeats	HSMM	muscle
36	chr19:57057000-57063200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr19:57058000-57062800	ZNF genes & repeats	HSMMtube	muscle
38	chr19:57058000-57063000	ZNF genes & repeats	Primary T cells from cord blood	blood
39	chr19:57058200-57068200	ZNF genes & repeats	Colon Smooth Muscle	Colon
40	chr19:57058400-57062800	ZNF genes & repeats	Brain Anterior Caudate	brain
41	chr19:57058400-57062800	ZNF genes & repeats	Colonic Mucosa	Colon
42	chr19:57058400-57062800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
43	chr19:57058400-57067200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
44	chr19:57058600-57062600	ZNF genes & repeats	NH-A	brain
45	chr19:57058600-57066400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
46	chr19:57058600-57068000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr19:57058800-57063000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
48	chr19:57058800-57063200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
49	chr19:57058800-57065800	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr19:57058800-57066800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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