Variant report

Variant	nsv524869
Chromosome Location	chr11:84111384-84120020
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 362 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:362 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7110833	chr11:84111384-84111385	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs183253370	chr11:84111430-84111431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs548910351	chr11:84111433-84111434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs576678447	chr11:84111474-84111475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567444397	chr11:84111518-84111519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs7125273	chr11:84111565-84111566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs151085609	chr11:84111603-84111604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs188025799	chr11:84111613-84111614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539460588	chr11:84111640-84111641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs7125294	chr11:84111645-84111646	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs7125720	chr11:84111678-84111679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs573459452	chr11:84111679-84111680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs567285141	chr11:84111729-84111730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs547884454	chr11:84111769-84111770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs564861631	chr11:84111788-84111789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs142094304	chr11:84111805-84111806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs555725418	chr11:84111808-84111809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs574176032	chr11:84111810-84111811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs192539172	chr11:84111811-84111812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs562557035	chr11:84111846-84111847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs80184939	chr11:84111867-84111868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs182661363	chr11:84111895-84111896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs545045598	chr11:84111942-84111943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs577894644	chr11:84111952-84111953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200211227	chr11:84111967-84111968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs117224066	chr11:84111995-84111996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs145866018	chr11:84112032-84112033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75272211	chr11:84112052-84112053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs138689152	chr11:84112109-84112110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201037543	chr11:84112207-84112208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs549528247	chr11:84112223-84112224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs187762559	chr11:84112247-84112248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs533205343	chr11:84112265-84112266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs576862037	chr11:84112282-84112283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373185885	chr11:84112293-84112294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs192472043	chr11:84112307-84112308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566851132	chr11:84112308-84112309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs534273260	chr11:84112346-84112347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572357239	chr11:84112409-84112410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs556007097	chr11:84112426-84112427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs141133952	chr11:84112444-84112445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs75047103	chr11:84112457-84112458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs556767301	chr11:84112470-84112471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs540716000	chr11:84112488-84112489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs114749473	chr11:84112511-84112512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553533053	chr11:84112512-84112513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs558874766	chr11:84112519-84112520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs571984749	chr11:84112520-84112521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs185026242	chr11:84112530-84112531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs10898233	chr11:84112590-84112591	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:82)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	20844748	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Colorectal cancer	16912164	CNVD
Mental retardation	17847001	CNVD
Melanoma	19509136	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Cancer	20164920	CNVD
Obesity	20622171	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD
Developmental delay	21147756	CNVD
Bipolar disorder	19114987	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Ductal carcinoma	22052326	CNVD
Autism	19246517	CNVD

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84109000-84119800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:84109800-84119600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:84118400-84118600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:84118400-84118600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:84118400-84118600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:84118400-84118600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:84118600-84119600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:84118600-84119800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:84118600-84119800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:84118800-84119800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:84119600-84119800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr11:84119600-84120200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:84119600-84121000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:84119600-84121000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:84119600-84121200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:84119600-84121400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:84119800-84120000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:84119800-84120200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:84119800-84120400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:84119800-84120400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr11:84119800-84120600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:84119800-84120800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:84119800-84120800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:84119800-84121000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr11:84119800-84121000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:84119800-84121000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:84119800-84121000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:84119800-84121200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:84119800-84121400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr11:84119800-84121600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:84120000-84120600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:84120000-84120600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:84120000-84120600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:84120000-84120600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:84120000-84120600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr11:84120000-84120600	Enhancers	Brain Angular Gyrus	brain
37	chr11:84120000-84120800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr11:84120000-84120800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr11:84120000-84121200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr11:84120000-84121400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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