Variant report

Variant	nsv524871
Chromosome Location	chr15:92690548-92704180
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr15:92704177-92704764	GM12878	blood:	n/a	n/a
2	BATF	chr15:92701730-92702055	GM12878	blood:	n/a	chr15:92701914-92701925
3	BHLHE40	chr15:92701856-92702021	GM12878	blood:	n/a	n/a
4	CHD2	chr15:92703192-92704170	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr15:92692220-92692370	AG09309	skin:	n/a	n/a
6	CTCF	chr15:92692340-92692490	HFF	foreskin:	n/a	n/a
7	CTCF	chr15:92692340-92692490	HMF	breast:	n/a	n/a
8	CTCF	chr15:92692260-92692410	AG09309	skin:	n/a	n/a
9	CTCF	chr15:92692240-92692390	BJ	skin:	n/a	n/a
10	CTCF	chr15:92692300-92692450	NHDF-neo	bronchial:	n/a	n/a
11	CTCF	chr15:92692260-92692410	AG09319	gingival:	n/a	n/a
12	CTCF	chr15:92692320-92692470	HRPEpiC	eye:	n/a	n/a
13	CTCF	chr15:92692280-92692430	AG10803	skin:	n/a	n/a
14	CTCF	chr15:92692380-92692530	NHLF	lung:	n/a	n/a
15	CTCF	chr15:92692280-92692430	BJ	skin:	n/a	n/a
16	CTCF	chr15:92692280-92692430	AG09319	gingival:	n/a	n/a
17	CTCF	chr15:92692320-92692470	AG04449	skin:	n/a	n/a
18	CTCF	chr15:92692280-92692430	HMF	breast:	n/a	n/a
19	CTCF	chr15:92692300-92692450	SK-N-SH_RA	brain:	n/a	n/a
20	CUX1	chr15:92704119-92704714	GM12878	blood:	n/a	n/a
21	E2F4	chr15:92691491-92691668	MCF10A-Er-Src	breast:	n/a	n/a
22	EBF1	chr15:92704162-92704888	GM12878	blood:	n/a	chr15:92704417-92704428
23	EBF1	chr15:92701735-92702057	GM12878	blood:	n/a	n/a
24	EP300	chr15:92701722-92702094	GM12878	blood:	n/a	chr15:92701946-92701955 chr15:92701917-92701926
25	EP300	chr15:92703437-92703909	H1-hESC	embryonic stem cell:	n/a	n/a
26	EP300	chr15:92692253-92692586	SK-N-SH_RA	brain:	n/a	n/a
27	EP300	chr15:92695057-92695335	SK-N-SH_RA	brain:	n/a	chr15:92695213-92695227 chr15:92695303-92695317
28	EP300	chr15:92692225-92692616	SK-N-SH_RA	brain:	n/a	n/a
29	EP300	chr15:92701736-92702072	GM12878	blood:	n/a	chr15:92701946-92701955 chr15:92701917-92701926
30	EP300	chr15:92701662-92701994	H1-hESC	embryonic stem cell:	n/a	chr15:92701946-92701955 chr15:92701917-92701926
31	FOS	chr15:92701695-92702126	MCF10A-Er-Src	breast:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
32	FOS	chr15:92701544-92702325	MCF10A-Er-Src	breast:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
33	FOS	chr15:92701626-92702353	MCF10A-Er-Src	breast:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
34	FOS	chr15:92701469-92702353	MCF10A-Er-Src	breast:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
35	FOSL1	chr15:92701784-92702034	K562	blood:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
36	FOSL1	chr15:92701543-92702373	HCT-116	colon:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
37	FOSL1	chr15:92701572-92702248	HCT-116	colon:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
38	FOSL2	chr15:92701734-92702033	A549	lung:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
39	FOSL2	chr15:92701632-92702233	A549	lung:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
40	FOSL2	chr15:92701744-92702072	HepG2	liver:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
41	FOSL2	chr15:92701687-92702042	HepG2	liver:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
42	FOSL2	chr15:92701649-92702093	MCF-7	breast:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
43	FOSL2	chr15:92701697-92702121	MCF-7	breast:	n/a	chr15:92701917-92701927 chr15:92701918-92701927 chr15:92701917-92701927 chr15:92701946-92701955 chr15:92701917-92701927 chr15:92701945-92701954 chr15:92701916-92701928 chr15:92701917-92701927
44	FOXP2	chr15:92692281-92692618	SK-N-MC	brain:	n/a	n/a
45	GATA2	chr15:92703304-92703688	SH-SY5Y	brain:	n/a	n/a
46	GATA2	chr15:92692256-92692577	SH-SY5Y	brain:	n/a	n/a
47	GATA3	chr15:92692248-92692740	SK-N-SH	brain:	n/a	n/a
48	GATA3	chr15:92703119-92703603	SH-SY5Y	brain:	n/a	n/a
49	GATA3	chr15:92692204-92692594	SH-SY5Y	brain:	n/a	n/a
50	GATA3	chr15:92692085-92692621	SK-N-SH	brain:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:92701885-92701935	NH-A	brain:	n/a
2	chr15:92701885-92701935	SK-N-SH_RA	brain:	n/a
3	chr15:92701885-92701935	HEEpiC	esophagus:	n/a
4	chr15:92701885-92701935	HCPEpiC	choroid plexus:	n/a
5	chr15:92701885-92701935	A549	lung:	n/a
6	chr15:92701885-92701935	HepG2	liver:	n/a
7	chr15:92701885-92701935	GM12878	blood:	n/a
8	chr15:92701885-92701935	SAEC	small airway:	n/a
9	chr15:92701885-92701935	GM06990	blood:	n/a
10	chr15:92701885-92701935	CMK	blood:	n/a
11	chr15:92701885-92701935	HEK293	kidney:	embryo
12	chr15:92701885-92701935	Caco-2	colon:	n/a
13	chr15:92701885-92701935	AG09309	skin:	n/a
14	chr15:92701885-92701935	NB4	blood:	n/a
15	chr15:92701885-92701935	HL-60	blood:	n/a
16	chr15:92701885-92701935	ovcar-3	ovarian:	n/a
17	chr15:92701885-92701935	H1-hESC	embryonic stem cell:	embryo
18	chr15:92701885-92701935	MCF-7	breast:	n/a
19	chr15:92701885-92701935	HRCEpiC	kidney:	n/a
20	chr15:92701885-92701935	HPAEpiC	pulmonary alveolar:	n/a
21	chr15:92701885-92701935	Jurkat	blood:	n/a
22	chr15:92701885-92701935	MCF10A-Er-Src	breast:	n/a
23	chr15:92701885-92701935	PrEC	prostate:	n/a
24	chr15:92701885-92701935	BE2_C	brain:	n/a
25	chr15:92701885-92701935	AoSMC	blood vessel:	n/a
26	chr15:92701885-92701935	IMR90	lung:	fetal
27	chr15:92701885-92701935	PFSK-1	brain:	n/a
28	chr15:92701885-92701935	AG04449	skin:	fetal
29	chr15:92701885-92701935	RPTEC	kidney:	n/a
30	chr15:92701885-92701935	AG09319	gingival:	n/a
31	chr15:92701885-92701935	HCM	heart:	n/a
32	chr15:92701885-92701935	HIPEpiC	eye:	n/a
33	chr15:92701885-92701935	HRPEpiC	eye:	n/a
34	chr15:92701885-92701935	PANC-1	pancreas:	n/a
35	chr15:92701885-92701935	ECC-1	luminal epithelium:	n/a
36	chr15:92701885-92701935	NT2-D1	testis:	n/a
37	chr15:92701885-92701935	U87	brain:	n/a
38	chr15:92701885-92701935	Hepatocyte	liver:	n/a
39	chr15:92701885-92701935	HNPCEpiC	eye:	n/a
40	chr15:92701885-92701935	ProgFib	skin:	n/a
41	chr15:92701885-92701935	SK-N-SH	brain:	n/a
42	chr15:92701885-92701935	K562	blood:	n/a
43	chr15:92701885-92701935	SK-N-MC	brain:	n/a
44	chr15:92701885-92701935	T-47D	breast:	n/a
45	chr15:92701885-92701935	GM12892	blood:	n/a
46	chr15:92701885-92701935	GM19239	blood:	n/a
47	chr15:92701885-92701935	HUVEC	blood vessel:	n/a
48	chr15:92701885-92701935	Hela-S3	cervix:	n/a
49	chr15:92701885-92701935	GM12891	blood:	n/a
50	chr15:92701885-92701935	LNCaP	prostate:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:92682991..92685535-chr15:92689557..92692167,2	MCF-7	breast:
2	chr15:92702907..92704729-chr15:92722855..92724927,2	K562	blood:
3	chr15:92690201..92691846-chr15:92709647..92712253,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM174B-5	chr15:92691981-92693013	ENSG00000249094
2	lnc-FAM174B-5	chr15:92700385-92700471	ENSG00000260661.1
3	lnc-FAM174B-5	chr15:92700385-92700471	ENSG00000249094
4	lnc-FAM174B-5	chr15:92691982-92693013	ENSG00000260661.1

Variant related genes	Relation type
SLCO3A1	TF binding region
SLCO3A1	CpG island
GIGYF1	miRNA target sites

Extended variants
information (count: 686 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:686 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs732546	chr15:92690548-92690549	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs374270110	chr15:92690549-92690550	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs371998527	chr15:92690568-92690569	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs200715611	chr15:92690582-92690583	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs74953094	chr15:92690613-92690614	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs574691710	chr15:92690669-92690670	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs74028830	chr15:92690677-92690678	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs375066822	chr15:92690682-92690683	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs545165716	chr15:92690683-92690684	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs740431	chr15:92690715-92690716	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs536155425	chr15:92690754-92690755	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs557389051	chr15:92690759-92690760	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs575984288	chr15:92690768-92690769	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs575553398	chr15:92690813-92690814	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs541930930	chr15:92690843-92690844	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs145878789	chr15:92690845-92690846	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs527929135	chr15:92690863-92690864	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs734387	chr15:92690870-92690871	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs542979596	chr15:92690873-92690874	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs533693207	chr15:92690883-92690884	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs115505086	chr15:92690890-92690891	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs537799401	chr15:92690923-92690924	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs372173502	chr15:92690925-92690926	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs185618567	chr15:92690969-92690970	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs71412546	chr15:92690982-92690983	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs77926189	chr15:92690995-92690996	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs553914564	chr15:92691001-92691002	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs734386	chr15:92691016-92691017	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs539725030	chr15:92691052-92691053	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs377518237	chr15:92691107-92691108	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs556001635	chr15:92691185-92691186	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs563625761	chr15:92691195-92691196	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs576071034	chr15:92691214-92691215	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs7494944	chr15:92691218-92691219	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs555471034	chr15:92691226-92691227	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs28576608	chr15:92691234-92691235	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs541132133	chr15:92691245-92691246	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs564724773	chr15:92691249-92691250	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs533316485	chr15:92691299-92691300	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs141311716	chr15:92691307-92691308	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs7494975	chr15:92691313-92691314	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs531379992	chr15:92691326-92691327	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs369370555	chr15:92691334-92691335	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs189348879	chr15:92691367-92691368	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs568192684	chr15:92691370-92691371	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs527406519	chr15:92691379-92691380	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs373189379	chr15:92691400-92691401	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs560922788	chr15:92691419-92691420	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs547133246	chr15:92691539-92691540	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs199815985	chr15:92691572-92691573	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:363 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:92648200-92692600	Weak transcription	NHLF	lung
3	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
5	chr15:92664000-92707000	Weak transcription	Liver	Liver
6	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
7	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:92668600-92690800	Weak transcription	Brain Angular Gyrus	brain
9	chr15:92669600-92703000	Weak transcription	Brain Anterior Caudate	brain
10	chr15:92671600-92708000	Weak transcription	Gastric	stomach
11	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
12	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:92672000-92704200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:92672200-92695600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:92672200-92703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:92672600-92691200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:92673400-92692600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:92674800-92707800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:92678600-92692400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:92678600-92701000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:92679200-92698800	Weak transcription	Thymus	Thymus
22	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr15:92684200-92701400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr15:92684600-92701000	Weak transcription	NHEK	skin
26	chr15:92684800-92701400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:92685200-92691600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:92685200-92701000	Weak transcription	HMEC	breast
29	chr15:92686000-92692400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:92686000-92703200	Weak transcription	Right Atrium	heart
31	chr15:92686200-92690600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:92686400-92692200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:92686400-92706800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:92686800-92707600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:92687400-92705000	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:92687600-92701000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr15:92687800-92691200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:92687800-92700400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:92688200-92692400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:92688400-92700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:92689000-92690600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:92689000-92690600	Enhancers	Fetal Brain Male	brain
44	chr15:92689200-92693400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:92689200-92697600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr15:92689200-92697600	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:92689200-92700200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr15:92689400-92690600	Flanking Active TSS	Brain Germinal Matrix	brain
49	chr15:92689400-92696200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:92689400-92697400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links