Variant report

Variant	nsv524901
Chromosome Location	chr9:105124832-105127708
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRIN3A-3	chr9:105127094-105127133	ucscGeneNc_uc004bbt_2
2	lnc-GRIN3A-3	chr9:105127094-105127137	NONHSAT133756
3	lnc-GRIN3A-3	chr9:105126760-105126881	NONHSAT133764

Extended variants
information (count: 33 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1364817	chr9:105124832-105124833	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs565361541	chr9:105124850-105124851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs73661250	chr9:105124872-105124873	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs144040596	chr9:105124899-105124900	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs144961891	chr9:105124900-105124901	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs529713372	chr9:105124907-105124908	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs549845056	chr9:105124914-105124915	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs569894168	chr9:105124932-105124933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs537085012	chr9:105125033-105125034	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184284794	chr9:105125058-105125059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs10990035	chr9:105125065-105125066	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs541071836	chr9:105125111-105125112	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs565749113	chr9:105125122-105125123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs73661251	chr9:105125166-105125167	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs530690519	chr9:105125182-105125183	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs7861486	chr9:105125242-105125243	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs186792792	chr9:105125281-105125282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs536235211	chr9:105125292-105125293	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs556291092	chr9:105125300-105125301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs10739841	chr9:105125329-105125330	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs545394086	chr9:105125360-105125361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs192800890	chr9:105125363-105125364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs369846915	chr9:105125365-105125366	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs572655340	chr9:105125368-105125369	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs541694838	chr9:105125396-105125397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs575068753	chr9:105126771-105126772	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs188628496	chr9:105126821-105126822	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs544019996	chr9:105126852-105126853	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs193235678	chr9:105126867-105126868	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs80316024	chr9:105127114-105127115	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs530615933	chr9:105127115-105127116	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs77600422	chr9:105127126-105127127	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs115356943	chr9:105127130-105127131	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Neuroblastoma	20406844	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105124800-105125400	Enhancers	Liver	Liver

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