Variant report

Variant	nsv524955
Chromosome Location	chr9:9890747-9893002
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 114 )

Variant overlapped rSNPs/rCNVs (count:139 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7853562	chr9:9890747-9890748	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs139720718	chr9:9890748-9890749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs372034243	chr9:9890771-9890772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs556180821	chr9:9890778-9890779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs549126581	chr9:9890790-9890791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs570132516	chr9:9890837-9890838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs149849153	chr9:9890849-9890850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs547868602	chr9:9890859-9890860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs185409414	chr9:9890860-9890861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs572570735	chr9:9890878-9890879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs541686110	chr9:9890926-9890927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558469776	chr9:9890932-9890933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs7868787	chr9:9890938-9890939	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs545803761	chr9:9890952-9890953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs4742634	chr9:9890962-9890963	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs547105770	chr9:9890978-9890979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190220817	chr9:9890980-9890981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs7872069	chr9:9890993-9890994	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs561886818	chr9:9891001-9891002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs527516342	chr9:9891039-9891040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs7871927	chr9:9891051-9891052	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs570396179	chr9:9891053-9891054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs183094624	chr9:9891061-9891062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs147965306	chr9:9891065-9891066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs569959795	chr9:9891070-9891071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs560475343	chr9:9891074-9891075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs535911008	chr9:9891104-9891105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141724712	chr9:9891131-9891132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370045853	chr9:9891137-9891138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs566194956	chr9:9891142-9891143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs535217232	chr9:9891160-9891161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs558428739	chr9:9891167-9891168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs578248822	chr9:9891185-9891186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs117076633	chr9:9891194-9891195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28719869	chr9:9891195-9891196	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs575962527	chr9:9891197-9891198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs79143150	chr9:9891207-9891208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561606322	chr9:9891274-9891275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572139573	chr9:9891277-9891278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs536144542	chr9:9891279-9891280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576272824	chr9:9891289-9891290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs540824138	chr9:9891294-9891295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186838257	chr9:9891296-9891297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs7872295	chr9:9891316-9891317	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs555068243	chr9:9891328-9891329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs145522251	chr9:9891332-9891333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs563673568	chr9:9891372-9891373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs35668805	chr9:9891375-9891376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs529252676	chr9:9891384-9891385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs549395121	chr9:9891398-9891399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:114)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung adenocarcinoma	17982442	CNVD
Breast cancer	21611746	CNVD
Schizophrenia	23813976	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9884400-9908200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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