Variant report

Variant	nsv525014
Chromosome Location	chr10:1013535-1024214
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:43)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:43 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:1011250..1013274-chr10:1018564..1020381,2	K562	blood:
2	chr10:1014659..1017574-chr10:1040488..1045906,4	K562	blood:
3	chr10:1019866..1021574-chr10:1021848..1023502,2	K562	blood:
4	chr10:1009125..1012338-chr10:1015177..1017521,3	K562	blood:
5	chr10:1015085..1016586-chr10:1048514..1051399,2	MCF-7	breast:
6	chr10:983875..986452-chr10:1011606..1014374,2	K562	blood:
7	chr10:1020473..1022394-chr10:1030542..1032536,2	K562	blood:
8	chr10:1018775..1022710-chr10:1032776..1036101,4	K562	blood:
9	chr10:1023937..1026356-chr10:1028602..1030529,2	K562	blood:
10	chr10:1019866..1021574-chr10:1021848..1023502,2	K562	blood:
11	chr10:1000614..1004584-chr10:1019814..1022762,4	K562	blood:
12	chr10:1015043..1019353-chr10:1030351..1034278,6	MCF-7	breast:
13	chr10:1014806..1016425-chr10:1022937..1025172,2	MCF-7	breast:
14	chr10:978959..981256-chr10:1013885..1016544,2	K562	blood:
15	chr10:1015182..1016794-chr10:1031895..1033943,2	K562	blood:
16	chr10:1013251..1015818-chr10:1022738..1024636,2	K562	blood:
17	chr10:949273..951052-chr10:1017196..1019797,2	K562	blood:
18	chr10:1016935..1018860-chr10:1032660..1034729,2	K562	blood:
19	chr10:1015119..1019104-chr10:1032459..1035516,7	MCF-7	breast:
20	chr10:976040..979233-chr10:1016379..1022615,6	MCF-7	breast:
21	chr10:1016732..1019141-chr10:1025032..1027093,3	MCF-7	breast:
22	chr10:1019010..1021511-chr10:1021947..1027823,6	MCF-7	breast:
23	chr10:986461..988686-chr10:1017171..1019953,2	MCF-7	breast:
24	chr10:1013251..1015818-chr10:1022738..1024636,2	K562	blood:
25	chr10:1014806..1016425-chr10:1022937..1025172,2	MCF-7	breast:
26	chr10:1005925..1008895-chr10:1011879..1014677,2	MCF-7	breast:
27	chr10:993234..997786-chr10:1013619..1016483,4	MCF-7	breast:
28	chr10:1019967..1021680-chr10:1093563..1096115,2	MCF-7	breast:
29	chr10:959058..959737-chr10:1016214..1016784,2	MCF-7	breast:
30	chr10:1019821..1022788-chr10:1029841..1033519,4	MCF-7	breast:
31	chr10:1000614..1004584-chr10:1019814..1022470,3	K562	blood:
32	chr10:1019010..1021511-chr10:1021947..1027823,6	MCF-7	breast:
33	chr10:1019761..1022243-chr10:1028840..1032476,4	MCF-7	breast:
34	chr10:1013235..1016804-chr10:1032534..1035039,3	K562	blood:
35	chr10:1006827..1010625-chr10:1012447..1015815,4	K562	blood:
36	chr10:1017049..1018015-chr10:1034396..1035314,2	MCF-7	breast:
37	chr10:1006112..1009530-chr10:1011286..1014390,5	K562	blood:
38	chr10:1017304..1018070-chr10:1030124..1030639,2	MCF-7	breast:
39	chr10:974758..977274-chr10:1018618..1021450,2	K562	blood:
40	chr10:1009296..1011482-chr10:1012719..1015110,2	MCF-7	breast:
41	chr10:986490..989100-chr10:1016201..1018491,2	MCF-7	breast:
42	chr10:1022407..1026665-chr10:1032291..1035293,7	MCF-7	breast:
43	chr10:975132..982582-chr10:1010670..1022073,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000067064	chromatin interactions
ENSG00000107929	chromatin interactions
ENSG00000205740	chromatin interactions
ENSG00000047056	chromatin interactions
ENSG00000229869	chromatin interactions
ENSG00000107937	chromatin interactions

Extended variants
information (count: 538 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:538 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6560863	chr10:1013535-1013536	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs79115513	chr10:1013564-1013565	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs117132023	chr10:1013584-1013585	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs540607627	chr10:1013622-1013623	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs561413077	chr10:1013632-1013633	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs79875639	chr10:1013639-1013640	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs550400444	chr10:1013655-1013656	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs563739349	chr10:1013656-1013657	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs140265876	chr10:1013662-1013663	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs375337731	chr10:1013663-1013664	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs113781489	chr10:1013682-1013683	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs369934153	chr10:1013726-1013727	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs566154904	chr10:1013727-1013728	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs182967516	chr10:1013779-1013780	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs188059834	chr10:1013785-1013786	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs372568684	chr10:1013794-1013795	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs191204505	chr10:1013843-1013844	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs574989222	chr10:1013870-1013871	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs556416985	chr10:1013888-1013889	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs576206268	chr10:1013924-1013925	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs184828969	chr10:1013937-1013938	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
22	rs79996359	chr10:1013964-1013965	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
23	rs35129879	chr10:1014014-1014015	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
24	rs149937529	chr10:1014080-1014081	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs369002686	chr10:1014162-1014163	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs145044914	chr10:1014187-1014188	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs187807174	chr10:1014199-1014200	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs141125247	chr10:1014234-1014235	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs577175285	chr10:1014242-1014243	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs532404414	chr10:1014252-1014253	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs543801994	chr10:1014253-1014254	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs144924074	chr10:1014256-1014257	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs146526345	chr10:1014282-1014283	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs72195880	chr10:1014283-1014284	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs58481304	chr10:1014289-1014290	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs201703895	chr10:1014290-1014291	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs199874852	chr10:1014291-1014292	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs12243599	chr10:1014295-1014296	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs529490593	chr10:1014345-1014346	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs138212223	chr10:1014346-1014347	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs559960698	chr10:1014435-1014436	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs562696316	chr10:1014456-1014457	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs528600922	chr10:1014459-1014460	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs551859504	chr10:1014486-1014487	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs141246327	chr10:1014497-1014498	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs375388285	chr10:1014506-1014507	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs192371878	chr10:1014508-1014509	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs547659084	chr10:1014520-1014521	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs571709461	chr10:1014541-1014542	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs530934434	chr10:1014589-1014590	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:235 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:998800-1026200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:1007600-1016800	Weak transcription	Right Atrium	heart
3	chr10:1009400-1014600	Weak transcription	Fetal Lung	lung
4	chr10:1012400-1019000	Enhancers	Placenta	Placenta
5	chr10:1012600-1013600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:1012600-1014200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:1012800-1013600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:1013000-1013600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:1013400-1013800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:1013400-1013800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:1013400-1016800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:1013600-1014800	Enhancers	Spleen	Spleen
13	chr10:1013600-1018800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:1014000-1014600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:1014200-1015200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:1014200-1020600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:1014400-1014800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
18	chr10:1014400-1015000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:1014600-1014800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:1014600-1015000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:1014600-1015000	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:1014600-1015200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:1014600-1015200	Enhancers	Fetal Lung	lung
24	chr10:1014600-1018600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:1014800-1015000	Enhancers	Adipose Nuclei	Adipose
26	chr10:1014800-1015800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:1014800-1022400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:1015000-1015200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:1015000-1016000	Weak transcription	Adipose Nuclei	Adipose
30	chr10:1015000-1016600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:1015200-1015600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:1015200-1015600	Weak transcription	Fetal Lung	lung
33	chr10:1015200-1015800	Enhancers	HepG2	liver
34	chr10:1015200-1016200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:1015600-1016400	Enhancers	Fetal Lung	lung
36	chr10:1015600-1017200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:1015800-1016000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:1015800-1016000	Enhancers	Gastric	stomach
39	chr10:1015800-1016000	Enhancers	Ovary	ovary
40	chr10:1015800-1016000	Flanking Active TSS	Stomach Mucosa	stomach
41	chr10:1015800-1016400	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr10:1015800-1016600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:1015800-1017000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:1015800-1018000	Enhancers	Pancreas	Pancrea
45	chr10:1015800-1018000	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr10:1015800-1018000	Flanking Active TSS	HepG2	liver
47	chr10:1015800-1019800	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr10:1016000-1016200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:1016000-1016200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:1016000-1016400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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