Variant report

Variant	nsv525145
Chromosome Location	chr10:56847522-56848985
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:56848923..56849830-chr22:31212899..31213539,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:59 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1733743	chr10:56847522-56847523	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs146992456	chr10:56847527-56847528	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs529373506	chr10:56847597-56847598	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs188878275	chr10:56847604-56847605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs191457334	chr10:56847680-56847681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs138092173	chr10:56847706-56847707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2247162	chr10:56847729-56847730	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs16906905	chr10:56847766-56847767	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs79110753	chr10:56847796-56847797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs76361646	chr10:56847798-56847799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs570036849	chr10:56847799-56847800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547816831	chr10:56847836-56847837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs183934424	chr10:56847854-56847855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs561010234	chr10:56847864-56847865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376778168	chr10:56847873-56847874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529499779	chr10:56847878-56847879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs10763180	chr10:56847898-56847899	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs566145408	chr10:56847930-56847931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs188263003	chr10:56847944-56847945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs16906908	chr10:56848024-56848025	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs74681426	chr10:56848046-56848047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs143779112	chr10:56848055-56848056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs537093972	chr10:56848089-56848090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs557023820	chr10:56848090-56848091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs181358241	chr10:56848114-56848115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs536346790	chr10:56848123-56848124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs377540901	chr10:56848129-56848130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs1833043	chr10:56848175-56848176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs10825461	chr10:56848177-56848178	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs10825462	chr10:56848206-56848207	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs114869226	chr10:56848219-56848220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs567932080	chr10:56848287-56848288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs80265022	chr10:56848302-56848303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs558092931	chr10:56848323-56848324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs545472843	chr10:56848379-56848380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370355896	chr10:56848380-56848381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs2489226	chr10:56848388-56848389	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs371878316	chr10:56848399-56848400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11004732	chr10:56848463-56848464	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs559881657	chr10:56848515-56848516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs144167058	chr10:56848548-56848549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs574021810	chr10:56848549-56848550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs190051073	chr10:56848557-56848558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs571646904	chr10:56848562-56848563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs150586714	chr10:56848586-56848587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs528994685	chr10:56848602-56848603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs531117247	chr10:56848643-56848644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs1936460	chr10:56848673-56848674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs16906911	chr10:56848686-56848687	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs34893947	chr10:56848699-56848700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Breast cancer	22522925	CNVD
Usher type I cohort	17277737	CNVD
Usher type I cohort	21436283	CNVD
Leukemia	21357790	CNVD
Medulloblastoma	22832581	CNVD
small cell lung cancer	17426248	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56841200-56849000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:56847200-56847600	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links