Variant report

Variant	nsv525208
Chromosome Location	chr9:2589864-2594577
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 243 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:243 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10967081	chr9:2589864-2589865	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs578194985	chr9:2589865-2589866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs148930510	chr9:2589866-2589867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560056125	chr9:2589893-2589894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs181624707	chr9:2589900-2589901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs146072306	chr9:2589919-2589920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs562552751	chr9:2589925-2589926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs531472150	chr9:2590025-2590026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs545218408	chr9:2590043-2590044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs12351935	chr9:2590057-2590058	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs560111507	chr9:2590065-2590066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558528496	chr9:2590066-2590067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs527539977	chr9:2590070-2590071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs547390590	chr9:2590081-2590082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138947106	chr9:2590106-2590107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529229801	chr9:2590121-2590122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs10738733	chr9:2590142-2590143	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs112052336	chr9:2590155-2590156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs537929248	chr9:2590162-2590163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs16908032	chr9:2590191-2590192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs564005367	chr9:2590213-2590214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs116989037	chr9:2590228-2590229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs184451267	chr9:2590229-2590230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188990525	chr9:2590236-2590237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs574308642	chr9:2590243-2590244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs115198483	chr9:2590244-2590245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs142791352	chr9:2590322-2590323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs10967084	chr9:2590349-2590350	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs181736755	chr9:2590351-2590352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs145625869	chr9:2590399-2590400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs386731730	chr9:2590403-2590404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs34020989	chr9:2590404-2590405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs34420221	chr9:2590414-2590415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs147399339	chr9:2590442-2590443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs148043267	chr9:2590477-2590478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs186305827	chr9:2590479-2590480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs529977729	chr9:2590503-2590504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs553746111	chr9:2590525-2590526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs189689872	chr9:2590580-2590581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181086530	chr9:2590584-2590585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs551602149	chr9:2590592-2590593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs141677536	chr9:2590605-2590606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs534113563	chr9:2590615-2590616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs150536896	chr9:2590631-2590632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs186268308	chr9:2590644-2590645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs139441229	chr9:2590656-2590657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376020545	chr9:2590666-2590667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556155262	chr9:2590674-2590675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs369514258	chr9:2590703-2590704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs113518898	chr9:2590712-2590713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Gastric cancer	16715143	CNVD
Glioblastoma multiforme	22286061	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	20531469	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Myelofibrosis	22110671	CNVD
Developmental delay	21373258	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Schizophrenia	23813976	CNVD
Ovarian cancer	22355333	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2576000-2591600	Weak transcription	Ovary	ovary
2	chr9:2583600-2591600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:2583800-2591400	Weak transcription	Right Ventricle	heart
4	chr9:2591200-2593400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:2591400-2591800	ZNF genes & repeats	Right Ventricle	heart
6	chr9:2591600-2592200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr9:2591600-2592200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:2591600-2592200	ZNF genes & repeats	Ovary	ovary
9	chr9:2591600-2594000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:2591800-2592200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:2591800-2593400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:2592200-2592800	ZNF genes & repeats	Fetal Lung	lung
13	chr9:2592200-2593800	Strong transcription	Ovary	ovary
14	chr9:2592800-2594000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr9:2592800-2596000	Weak transcription	Fetal Lung	lung
16	chr9:2593000-2593600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
17	chr9:2593200-2593600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr9:2593200-2594000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr9:2593400-2593800	ZNF genes & repeats	Fetal Brain Male	brain
20	chr9:2593400-2594000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:2593400-2595000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:2593600-2594000	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr9:2593800-2598600	Weak transcription	Ovary	ovary
24	chr9:2594000-2595200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:2594000-2596000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:2594000-2610400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:2594200-2594400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links