Variant report

Variant	nsv525293
Chromosome Location	chr9:8847233-8850071
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-17	chr9:8848134-8848323	ucscGeneNc_uc003zku_1
2	lnc-KDM4C-17	chr9:8849956-8851724	ucscGeneNc_uc003zku_1

Extended variants
information (count: 160 )
Associated
traits (count: 112 )

Variant overlapped rSNPs/rCNVs (count:160 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2117099	chr9:8847233-8847234	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs562100252	chr9:8847265-8847266	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs574399022	chr9:8847271-8847272	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs541542288	chr9:8847291-8847292	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs569586095	chr9:8847295-8847296	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs10815973	chr9:8847324-8847325	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs367815811	chr9:8847329-8847330	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs185812170	chr9:8847347-8847348	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs539117288	chr9:8847352-8847353	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs1972797	chr9:8847353-8847354	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs58086996	chr9:8847366-8847367	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs190718002	chr9:8847369-8847370	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs532806784	chr9:8847379-8847380	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs116418555	chr9:8847393-8847394	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs10815974	chr9:8847403-8847404	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs549590717	chr9:8847408-8847409	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs530142508	chr9:8847429-8847430	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs113519438	chr9:8847441-8847442	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs566385324	chr9:8847461-8847462	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs182006616	chr9:8847467-8847468	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs146027640	chr9:8847549-8847550	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs567002833	chr9:8847551-8847552	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs533740740	chr9:8847582-8847583	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs367899286	chr9:8847601-8847602	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs558291565	chr9:8847669-8847670	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs187109424	chr9:8847696-8847697	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs537722164	chr9:8847698-8847699	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs555546538	chr9:8847703-8847704	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs371936431	chr9:8847717-8847718	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs556058153	chr9:8847740-8847741	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs190627461	chr9:8847742-8847743	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs374003710	chr9:8847748-8847749	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs541853768	chr9:8847774-8847775	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs553575720	chr9:8847788-8847789	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs182864293	chr9:8847789-8847790	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs185743720	chr9:8847839-8847840	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs545915792	chr9:8847858-8847859	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs375696681	chr9:8847862-8847863	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs565449658	chr9:8847867-8847868	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs1433550	chr9:8847939-8847940	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs72704324	chr9:8847950-8847951	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs72704326	chr9:8847956-8847957	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs566189140	chr9:8847960-8847961	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs2163944	chr9:8848050-8848051	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs530039167	chr9:8848071-8848072	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs368033230	chr9:8848086-8848087	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs113352934	chr9:8848093-8848094	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs190112221	chr9:8848101-8848102	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs147822685	chr9:8848109-8848110	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs527739925	chr9:8848127-8848128	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:112)

Disease	PMID	Source
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	21811587	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8835000-8850800	Weak transcription	Fetal Kidney	kidney
2	chr9:8835200-8852000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:8835200-8852400	Weak transcription	Aorta	Aorta
4	chr9:8835600-8850800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8835600-8851000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:8835800-8851000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:8843000-8852400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:8843000-8855200	Weak transcription	Fetal Stomach	stomach
9	chr9:8843000-8856600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:8843200-8854200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:8843400-8850800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:8843400-8850800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:8843600-8850800	Weak transcription	Fetal Lung	lung
14	chr9:8843800-8850800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:8844000-8854400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:8844600-8848200	Enhancers	Brain Germinal Matrix	brain
17	chr9:8845800-8851000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:8845800-8855600	Weak transcription	Ovary	ovary
19	chr9:8845800-8856600	Weak transcription	Psoas Muscle	Psoas
20	chr9:8846000-8848200	Enhancers	Brain Substantia Nigra	brain
21	chr9:8846000-8848600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr9:8846000-8851000	Weak transcription	Fetal Heart	heart
23	chr9:8846200-8847800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:8846600-8848800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:8846800-8852400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:8847000-8847800	Weak transcription	Brain Angular Gyrus	brain
27	chr9:8847000-8847800	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:8847000-8850000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:8847000-8850800	Weak transcription	Fetal Brain Female	brain
30	chr9:8847000-8851000	Weak transcription	Brain Anterior Caudate	brain
31	chr9:8847000-8854600	Weak transcription	Fetal Muscle Leg	muscle
32	chr9:8847200-8847600	Weak transcription	Fetal Brain Male	brain
33	chr9:8847600-8848400	Enhancers	Fetal Brain Male	brain
34	chr9:8847800-8848000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr9:8847800-8848200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:8847800-8848200	Enhancers	Brain Angular Gyrus	brain
37	chr9:8847800-8848400	Active TSS	Brain Hippocampus Middle	brain
38	chr9:8848000-8848200	Enhancers	Small Intestine	intestine
39	chr9:8848000-8851000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:8848200-8850200	Weak transcription	Brain Substantia Nigra	brain
41	chr9:8848200-8850800	Weak transcription	Brain Germinal Matrix	brain
42	chr9:8848200-8851000	Weak transcription	Brain Angular Gyrus	brain
43	chr9:8848400-8849600	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:8848400-8851000	Weak transcription	Fetal Brain Male	brain
45	chr9:8848600-8851400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:8848800-8849600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:8849600-8850000	Enhancers	Brain Hippocampus Middle	brain
48	chr9:8849600-8850200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:8850000-8850800	Weak transcription	Brain Hippocampus Middle	brain
50	chr9:8850000-8853600	Enhancers	Brain Cingulate Gyrus	brain

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