Variant report

Variant	nsv525304
Chromosome Location	chr11:92829904-92877533
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:92864615..92865138-chr11:92958534..92959079,2	K562	blood:
2	chr11:92828855..92830678-chr11:92832342..92834792,2	K562	blood:
3	chr11:92862981..92865243-chr11:92958375..92960659,2	MCF-7	breast:
4	chr11:92675244..92676178-chr11:92864623..92865466,2	MCF-7	breast:
5	chr11:92828855..92830678-chr11:92832342..92834792,2	K562	blood:
6	chr11:92819613..92822569-chr11:92833632..92835784,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC36A4-3	chr11:92877341-92879658	NONHSAT023638

No data

Extended variants
information (count: 1485 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:1485 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7939730	chr11:92829904-92829905	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs564072769	chr11:92829926-92829927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531425433	chr11:92829939-92829940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs543246819	chr11:92829940-92829941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs561522710	chr11:92829977-92829978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs553821283	chr11:92830091-92830092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs373888454	chr11:92830121-92830122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs192898247	chr11:92830158-92830159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs182705147	chr11:92830276-92830277	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs77972789	chr11:92830279-92830280	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs565924186	chr11:92830338-92830339	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs117970868	chr11:92830413-92830414	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs117538585	chr11:92830415-92830416	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs148017102	chr11:92830416-92830417	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs375905540	chr11:92830417-92830418	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs3030026	chr11:92830441-92830442	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs147480134	chr11:92830453-92830454	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs551745858	chr11:92830459-92830460	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs80287863	chr11:92830525-92830526	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs542150137	chr11:92830535-92830536	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs139890829	chr11:92830556-92830557	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs555871611	chr11:92830691-92830692	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs567875663	chr11:92830708-92830709	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs569481791	chr11:92830745-92830746	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs74936734	chr11:92830758-92830759	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs60918454	chr11:92830789-92830790	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs558707785	chr11:92830813-92830814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs367621048	chr11:92830840-92830841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs186582853	chr11:92830885-92830886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs7943763	chr11:92830952-92830953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs115897511	chr11:92830966-92830967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs191420654	chr11:92831006-92831007	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs564248171	chr11:92831017-92831018	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373666308	chr11:92831063-92831064	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs540648509	chr11:92831065-92831066	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113161566	chr11:92831121-92831122	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs556200881	chr11:92831267-92831268	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs184576426	chr11:92831310-92831311	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368781004	chr11:92831358-92831359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs7106131	chr11:92831372-92831373	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs189335774	chr11:92831430-92831431	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs563726397	chr11:92831432-92831433	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs192821178	chr11:92831448-92831449	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530894022	chr11:92831463-92831464	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs79885388	chr11:92831478-92831479	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs112039950	chr11:92831493-92831494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs368048412	chr11:92831529-92831530	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185241070	chr11:92831616-92831617	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs535283619	chr11:92831631-92831632	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs547160614	chr11:92831641-92831642	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	21062444	CNVD
Cancer	21499728	CNVD
Breast cancer	19181860	CNVD
Breast cancer	17603634	CNVD
Mantle cell lymphoma	19029149	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:268 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92828800-92830200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:92829600-92833000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:92830200-92830800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:92830800-92831000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:92831000-92833000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:92832200-92833200	Enhancers	Osteobl	bone
7	chr11:92832200-92834800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:92832400-92833800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:92832400-92834000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:92832400-92834000	Enhancers	HMEC	breast
11	chr11:92832400-92834000	Enhancers	NHLF	lung
12	chr11:92832400-92834200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:92832400-92834200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:92832400-92834200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:92832400-92834200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:92832400-92834600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:92832400-92834800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:92832600-92833800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:92832600-92834000	Enhancers	NHDF-Ad	bronchial
20	chr11:92832600-92834200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:92832800-92833600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr11:92832800-92834000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:92832800-92834200	Enhancers	NH-A	brain
24	chr11:92833000-92833200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:92833000-92833400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr11:92833000-92833600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:92833000-92833600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:92833000-92834000	Enhancers	Stomach Mucosa	stomach
29	chr11:92833200-92833400	Enhancers	Gastric	stomach
30	chr11:92833200-92833600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:92833200-92833600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr11:92833200-92834000	Flanking Active TSS	Osteobl	bone
33	chr11:92833400-92833800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:92833400-92833800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:92833400-92833800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr11:92833400-92833800	Flanking Active TSS	Gastric	stomach
37	chr11:92833400-92834000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr11:92833800-92834200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:92833800-92834800	Weak transcription	Gastric	stomach
40	chr11:92833800-92846600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:92834000-92834400	Weak transcription	Stomach Mucosa	stomach
42	chr11:92834000-92834600	Enhancers	Osteobl	bone
43	chr11:92834200-92834800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:92834400-92835200	Enhancers	Stomach Mucosa	stomach
45	chr11:92834800-92835000	Enhancers	Gastric	stomach
46	chr11:92839000-92839600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:92840800-92845800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:92842400-92842800	Enhancers	Stomach Mucosa	stomach
49	chr11:92843000-92844600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:92843200-92843600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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