Variant report

Variant	nsv525768
Chromosome Location	chr15:55466155-55485494
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:55469036..55471417-chr15:55477962..55479850,2	K562	blood:
2	chr15:55468427..55470541-chr15:55470610..55476298,5	K562	blood:
3	chr15:55473947..55475927-chr15:55477072..55479129,2	K562	blood:
4	chr15:55473058..55474936-chr15:55475651..55479463,4	K562	blood:
5	chr15:55468607..55473383-chr15:55473749..55481384,11	K562	blood:
6	chr15:55473058..55474936-chr15:55475651..55479463,4	K562	blood:
7	chr10:13366886..13368696-chr15:55465125..55467342,2	MCF-7	breast:
8	chr15:55468427..55470541-chr15:55470610..55476298,5	K562	blood:
9	chr15:55475644..55477997-chr15:55484003..55486160,2	MCF-7	breast:
10	chr15:55468607..55473383-chr15:55473749..55481384,11	K562	blood:
11	chr15:55485173..55489207-chr15:55609824..55611374,3	K562	blood:
12	chr15:55468513..55470349-chr15:55490736..55492904,2	K562	blood:
13	chr15:55475644..55477997-chr15:55484003..55486160,2	MCF-7	breast:
14	chr15:55482890..55486340-chr15:55487631..55490505,4	MCF-7	breast:
15	chr15:55463428..55465333-chr15:55485353..55487968,3	K562	blood:
16	chr15:55469036..55471417-chr15:55477962..55479850,2	K562	blood:
17	chr15:55470856..55473009-chr15:55473749..55475937,3	K562	blood:
18	chr15:55484699..55490442-chr15:55579270..55584640,8	K562	blood:
19	chr15:55469341..55471788-chr15:55488673..55490223,2	MCF-7	breast:
20	chr15:55473947..55475927-chr15:55477072..55479129,2	K562	blood:
21	chr15:55478102..55482206-chr15:55486011..55490260,8	MCF-7	breast:
22	chr15:55470856..55473009-chr15:55473749..55475937,3	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIGB-2	chr15:55482151-55482204	ucscGeneNc_uc002aeh_2
2	lnc-PIGB-2	chr15:55476414-55476596	ucscGeneNc_uc002aeh_2
3	lnc-RSL24D1-1	chr15:55469323-55470373	ENSG00000248800
4	lnc-PIGB-2	chr15:55473443-55473581	ucscGeneNc_uc002aeh_2
5	lnc-RSL24D1-1	chr15:55464171-55468937	ENSG00000248800
6	lnc-PIGB-2	chr15:55481509-55481528	ucscGeneNc_uc002aeh_2
7	lnc-PIGB-2	chr15:55485456-55485554	ucscGeneNc_uc002aeh_2
8	lnc-PIGB-2	chr15:55477831-55477920	ucscGeneNc_uc002aeh_2

No data

Variant related genes	Relation type
ENSG00000069974	chromatin interactions
ENSG00000137876	chromatin interactions
ENSG00000225973	chromatin interactions
ENSG00000069943	chromatin interactions
ANKRD17	miRNA target sites
KLHL2	miRNA target sites

Extended variants
information (count: 808 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:808 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4774750	chr15:55466155-55466156	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs192941709	chr15:55466182-55466183	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs112293518	chr15:55466184-55466185	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs539105999	chr15:55466209-55466210	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs576250103	chr15:55466276-55466277	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs35377684	chr15:55466280-55466281	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs552404496	chr15:55466286-55466287	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs566037820	chr15:55466312-55466313	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs73407816	chr15:55466330-55466331	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs111743898	chr15:55466353-55466354	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs142641885	chr15:55466354-55466355	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs112911355	chr15:55466358-55466359	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs113334761	chr15:55466362-55466363	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs576340672	chr15:55466403-55466404	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs146036398	chr15:55466404-55466405	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs372436560	chr15:55466408-55466409	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs577827283	chr15:55466413-55466414	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs73407817	chr15:55466424-55466425	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs140006063	chr15:55466443-55466444	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs560593735	chr15:55466451-55466452	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs553812113	chr15:55466468-55466469	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs143600625	chr15:55466477-55466478	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs563504663	chr15:55466536-55466537	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs532617464	chr15:55466571-55466572	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs549829979	chr15:55466589-55466590	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs566051177	chr15:55466609-55466610	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs528626886	chr15:55466645-55466646	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs150838747	chr15:55466648-55466649	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs568497363	chr15:55466650-55466651	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs368188396	chr15:55466711-55466712	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs542655645	chr15:55466742-55466743	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs77625356	chr15:55466789-55466790	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs112912564	chr15:55466790-55466791	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs531710523	chr15:55466823-55466824	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs548843486	chr15:55466824-55466825	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs569818889	chr15:55466878-55466879	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs538462477	chr15:55466927-55466928	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs189557559	chr15:55466971-55466972	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs200089148	chr15:55466988-55466989	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs572040681	chr15:55466997-55466998	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs11858001	chr15:55467000-55467001	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs116412658	chr15:55467076-55467077	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs574110476	chr15:55467091-55467092	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs565458190	chr15:55467116-55467117	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs543679146	chr15:55467125-55467126	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs11071172	chr15:55467185-55467186	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs532698718	chr15:55467196-55467197	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs546073031	chr15:55467209-55467210	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs548065486	chr15:55467217-55467218	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs371351794	chr15:55467253-55467254	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495309	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Prostate cancer	22341455	CNVD

Chromatin state (count:599 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55455600-55469600	Weak transcription	Aorta	Aorta
2	chr15:55455800-55487200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:55459000-55469800	Weak transcription	HSMM	muscle
4	chr15:55461000-55469200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:55462600-55470200	Weak transcription	Fetal Lung	lung
6	chr15:55462600-55471600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:55462600-55488600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:55463200-55470400	Weak transcription	A549	lung
9	chr15:55463200-55472400	Weak transcription	Ovary	ovary
10	chr15:55463200-55474600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:55463400-55466200	Weak transcription	Psoas Muscle	Psoas
12	chr15:55463400-55472200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:55463800-55472600	Weak transcription	Fetal Kidney	kidney
14	chr15:55464000-55470800	Weak transcription	Brain Germinal Matrix	brain
15	chr15:55464400-55469000	Weak transcription	Primary T cells from cord blood	blood
16	chr15:55464400-55470600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr15:55464600-55472400	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:55464800-55488200	Weak transcription	Lung	lung
19	chr15:55465000-55469600	Weak transcription	Primary B cells from cord blood	blood
20	chr15:55465200-55470400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr15:55465200-55470800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr15:55465400-55469800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:55465400-55469800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:55465400-55470400	Weak transcription	Dnd41	blood
25	chr15:55465400-55470800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:55465400-55471000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:55465400-55471200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:55465400-55471400	Weak transcription	Brain Angular Gyrus	brain
29	chr15:55465400-55472600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:55465400-55476600	Weak transcription	Brain Anterior Caudate	brain
31	chr15:55465600-55470000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:55465600-55470000	Weak transcription	Adipose Nuclei	Adipose
33	chr15:55465600-55470200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:55465600-55470400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:55465600-55470400	Weak transcription	Left Ventricle	heart
36	chr15:55465800-55467400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:55465800-55469400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:55465800-55470200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:55465800-55471600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:55466000-55469200	Weak transcription	Liver	Liver
41	chr15:55466200-55466800	Strong transcription	Psoas Muscle	Psoas
42	chr15:55466200-55470800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:55466600-55469000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:55466600-55470000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:55466600-55470400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:55466600-55470400	Weak transcription	GM12878-XiMat	blood
47	chr15:55466600-55470800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:55466600-55471400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:55466600-55472000	Weak transcription	Placenta	Placenta
50	chr15:55466800-55469400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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