Variant report

Variant	nsv526143
Chromosome Location	chr6:56917538-56954439
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:368)
CpG islands
(count:305)
Chromatin interactive
region (count:57)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:368 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:56934202-56935050	K562	blood:	n/a	n/a
2	ARID3A	chr6:56951602-56951813	HepG2	liver:	n/a	n/a
3	ATF1	chr6:56937029-56937237	K562	blood:	n/a	n/a
4	ATF1	chr6:56954345-56955010	K562	blood:	n/a	n/a
5	ATF2	chr6:56954421-56955059	GM12878	blood:	n/a	n/a
6	BCL3	chr6:56954430-56955027	K562	blood:	n/a	n/a
7	BCLAF1	chr6:56954392-56955175	GM12878	blood:	n/a	n/a
8	BCLAF1	chr6:56954356-56954969	K562	blood:	n/a	n/a
9	BHLHE40	chr6:56934811-56934994	K562	blood:	n/a	n/a
10	BHLHE40	chr6:56953566-56953717	K562	blood:	n/a	n/a
11	BHLHE40	chr6:56954343-56955004	K562	blood:	n/a	chr6:56954714-56954730
12	CBX3	chr6:56954349-56955081	HCT-116	colon:	n/a	n/a
13	CBX3	chr6:56934424-56935344	K562	blood:	n/a	n/a
14	CBX3	chr6:56934707-56935238	K562	blood:	n/a	n/a
15	CCNT2	chr6:56954385-56955109	K562	blood:	n/a	n/a
16	CCNT2	chr6:56932968-56933212	K562	blood:	n/a	n/a
17	CCNT2	chr6:56934831-56935079	K562	blood:	n/a	n/a
18	CEBPB	chr6:56920848-56921032	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chr6:56920841-56921003	A549	lung:	n/a	n/a
20	CEBPB	chr6:56951654-56951904	HepG2	liver:	n/a	n/a
21	CEBPD	chr6:56954432-56955913	K562	blood:	n/a	n/a
22	CEBPD	chr6:56934640-56935189	K562	blood:	n/a	n/a
23	CEBPD	chr6:56954398-56955089	K562	blood:	n/a	n/a
24	CHD1	chr6:56954143-56955164	IMR90	lung:	n/a	n/a
25	CHD1	chr6:56954388-56954809	GM12878	blood:	n/a	n/a
26	CHD2	chr6:56952765-56952963	GM12878	blood:	n/a	n/a
27	CHD2	chr6:56952604-56953056	K562	blood:	n/a	n/a
28	CHD2	chr6:56934827-56935012	K562	blood:	n/a	n/a
29	CHD2	chr6:56934853-56935158	H1-hESC	embryonic stem cell:	n/a	n/a
30	CREB1	chr6:56954424-56955082	K562	blood:	n/a	n/a
31	CREB1	chr6:56954343-56955104	K562	blood:	n/a	n/a
32	CREB1	chr6:56954431-56955095	HepG2	liver:	n/a	n/a
33	CTCF	chr6:56940114-56940142	K562	blood:	n/a	n/a
34	CTCF	chr6:56933480-56933630	AoAF	blood vessel:	n/a	n/a
35	CTCF	chr6:56940078-56940190	Hela-S3	cervix:	n/a	n/a
36	CTCF	chr6:56940060-56940210	HPAF	blood vessel:	n/a	n/a
37	CTCF	chr6:56921395-56921466	GM10248	blood:	n/a	n/a
38	CTCF	chr6:56940060-56940210	HCPEpiC	choroid plexus:	n/a	n/a
39	CTCF	chr6:56928850-56928925	GM13976	blood:	n/a	n/a
40	CTCF	chr6:56940093-56940133	GM12878	blood:	n/a	n/a
41	CTCF	chr6:56940020-56940170	AG10803	skin:	n/a	n/a
42	CTCF	chr6:56939840-56939990	GM12873	blood:	n/a	n/a
43	CTCF	chr6:56939980-56940130	HMEC	breast:	n/a	n/a
44	CTCF	chr6:56940200-56940350	Caco-2	colon:	n/a	n/a
45	CTCF	chr6:56940020-56940170	HMF	breast:	n/a	n/a
46	CTCF	chr6:56944691-56944726	MCF-7	breast:	n/a	n/a
47	CTCF	chr6:56940000-56940150	HCM	heart:	n/a	n/a
48	CTCF	chr6:56939980-56940130	AG04450	lung:	n/a	n/a
49	CTCF	chr6:56940092-56940170	GM12878	blood:	n/a	n/a
50	CTCF	chr6:56940053-56940167	HUVEC	blood vessel:	n/a	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:56934764-56934814	PrEC	prostate:	n/a
2	chr6:56934764-56934814	Jurkat	blood:	n/a
3	chr6:56953492-56953542	SK-N-SH	brain:	n/a
4	chr6:56952208-56952258	ECC-1	luminal epithelium:	n/a
5	chr6:56953492-56953542	PANC-1	pancreas:	n/a
6	chr6:56953982-56954032	AoSMC	blood vessel:	n/a
7	chr6:56952208-56952258	CMK	blood:	n/a
8	chr6:56952208-56952258	SK-N-SH	brain:	n/a
9	chr6:56953982-56954032	AG09309	skin:	n/a
10	chr6:56934764-56934814	GM12878	blood:	n/a
11	chr6:56953492-56953542	IMR90	lung:	fetal
12	chr6:56953982-56954032	HRPEpiC	eye:	n/a
13	chr6:56953991-56954041	HCF	heart:	n/a
14	chr6:56953991-56954041	HNPCEpiC	eye:	n/a
15	chr6:56953991-56954041	HPAEpiC	pulmonary alveolar:	n/a
16	chr6:56953492-56953542	HCT-116	colon:	n/a
17	chr6:56953492-56953542	K562	blood:	n/a
18	chr6:56953982-56954032	HRE	kidney:	n/a
19	chr6:56953492-56953542	HEEpiC	esophagus:	n/a
20	chr6:56953492-56953542	ovcar-3	ovarian:	n/a
21	chr6:56953991-56954041	BE2_C	brain:	n/a
22	chr6:56953991-56954041	LNCaP	prostate:	n/a
23	chr6:56953991-56954041	NB4	blood:	n/a
24	chr6:56953492-56953542	A549	lung:	n/a
25	chr6:56952208-56952258	Jurkat	blood:	n/a
26	chr6:56953991-56954041	GM12891	blood:	n/a
27	chr6:56953991-56954041	T-47D	breast:	n/a
28	chr6:56953991-56954041	AG04450	lung:	fetal
29	chr6:56934764-56934814	HCT-116	colon:	n/a
30	chr6:56952208-56952258	RPTEC	kidney:	n/a
31	chr6:56934764-56934814	SAEC	small airway:	n/a
32	chr6:56953991-56954041	GM06990	blood:	n/a
33	chr6:56953982-56954032	SAEC	small airway:	n/a
34	chr6:56934764-56934814	RPTEC	kidney:	n/a
35	chr6:56952208-56952258	NHDF-neo	bronchial:	n/a
36	chr6:56953492-56953542	AG04449	skin:	fetal
37	chr6:56952208-56952258	GM12892	blood:	n/a
38	chr6:56952208-56952258	NH-A	brain:	n/a
39	chr6:56934764-56934814	HRPEpiC	eye:	n/a
40	chr6:56934764-56934814	NHBE	bronchial:	n/a
41	chr6:56934764-56934814	NB4	blood:	n/a
42	chr6:56953991-56954041	PFSK-1	brain:	n/a
43	chr6:56953982-56954032	IMR90	lung:	fetal
44	chr6:56953991-56954041	SKMC	muscle:	n/a
45	chr6:56934764-56934814	AG04450	lung:	fetal
46	chr6:56953991-56954041	ovcar-3	ovarian:	n/a
47	chr6:56934764-56934814	AoSMC	blood vessel:	n/a
48	chr6:56953991-56954041	GM12892	blood:	n/a
49	chr6:56953492-56953542	NH-A	brain:	n/a
50	chr6:56953991-56954041	HRPEpiC	eye:	n/a

(count:57 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:56911424..56913498-chr6:56915696..56917760,2	K562	blood:
2	chr6:56921296..56922796-chr6:56924652..56926285,2	K562	blood:
3	chr6:56948909..56950719-chr6:56952712..56954669,2	K562	blood:
4	chr6:56934363..56937473-chr6:56937699..56942406,5	K562	blood:
5	chr6:56922057..56924606-chr6:56948935..56951411,2	K562	blood:
6	chr6:56916177..56920569-chr6:56928731..56932543,4	K562	blood:
7	chr6:56916177..56920569-chr6:56928731..56932543,4	K562	blood:
8	chr6:56934993..56938147-chr6:56946387..56949781,3	K562	blood:
9	chr6:56927166..56931144-chr6:56933264..56935740,4	K562	blood:
10	chr6:56947111..56950590-chr6:56951597..56954777,4	K562	blood:
11	chr6:56918320..56920643-chr6:56931353..56933540,2	K562	blood:
12	chr6:56916004..56918245-chr6:56961868..56964513,2	K562	blood:
13	chr6:56921415..56923823-chr6:56954797..56956422,2	MCF-7	breast:
14	chr6:56885077..56887433-chr6:56918362..56920349,2	K562	blood:
15	chr6:56934363..56937473-chr6:56937699..56942406,5	K562	blood:
16	chr6:56923126..56925148-chr6:56926717..56929557,2	K562	blood:
17	chr6:56921585..56925316-chr6:56953149..56956196,3	K562	blood:
18	chr6:56923524..56925614-chr6:56931243..56933274,4	K562	blood:
19	chr6:56620669..56623205-chr6:56923260..56926182,2	K562	blood:
20	chr6:56926145..56928698-chr6:56928741..56930735,2	K562	blood:
21	chr6:56932277..56934090-chr6:56953259..56955727,2	K562	blood:
22	chr6:56927166..56931144-chr6:56933264..56935740,4	K562	blood:
23	chr6:56927166..56929779-chr6:56933810..56935740,2	K562	blood:
24	chr6:56927954..56930508-chr6:56970554..56972166,2	K562	blood:
25	chr6:56946361..56949087-chr6:56953500..56956210,2	MCF-7	breast:
26	chr6:56938112..56940287-chr6:56942414..56944879,2	K562	blood:
27	chr6:56810289..56813154-chr6:56935958..56938230,2	K562	blood:
28	chr6:56938787..56941185-chr6:56942414..56944415,2	K562	blood:
29	chr6:56818175..56820082-chr6:56931609..56933583,2	K562	blood:
30	chr6:56925002..56928122-chr6:56956641..56958794,3	K562	blood:
31	chr20:52224544..52225205-chr6:56940257..56941075,2	MCF-7	breast:
32	chr6:56948909..56950719-chr6:56952712..56954669,2	K562	blood:
33	chr6:56934363..56937335-chr6:56939839..56941721,2	K562	blood:
34	chr6:56952370..56954266-chr6:56971549..56974496,2	K562	blood:
35	chr6:56934363..56937335-chr6:56939839..56941721,2	K562	blood:
36	chr6:56922057..56924606-chr6:56948935..56951411,2	K562	blood:
37	chr6:56926145..56928698-chr6:56928741..56930735,2	K562	blood:
38	chr6:56911298..56913104-chr6:56932457..56934576,2	K562	blood:
39	chr6:56915285..56917607-chr6:56951882..56953453,2	K562	blood:
40	chr6:56918758..56920870-chr6:56963743..56966191,2	K562	blood:
41	chr6:56927166..56929779-chr6:56933810..56935740,2	K562	blood:
42	chr6:56938787..56941185-chr6:56942414..56944415,2	K562	blood:
43	chr6:56820330..56821970-chr6:56922226..56924549,2	MCF-7	breast:
44	chr6:56935225..56943628-chr6:56947006..56954759,13	K562	blood:
45	chr6:56951936..56954342-chr6:57037762..57039413,2	K562	blood:
46	chr6:56818718..56821144-chr6:56954189..56956169,2	MCF-7	breast:
47	chr6:56883885..56886114-chr6:56933093..56934957,2	K562	blood:
48	chr6:56921296..56922796-chr6:56924652..56926285,2	K562	blood:
49	chr6:56938112..56940287-chr6:56942414..56944879,2	K562	blood:
50	chr6:56918320..56920643-chr6:56931353..56933540,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA1586-1	chr6:56924096-56924235	NONHSAT113257
2	lnc-KIAA1586-1	chr6:56931260-56931740	NONHSAT113257
3	lnc-KIAA1586-1	chr6:56932571-56933175	NONHSAT113257

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	KIAA1586	hsa-miR-340-5p	chr6:56919696-56919716
2	KIAA1586	hsa-miR-340-5p	chr6:56919709-56919715

Variant related genes	Relation type
ZNF451	TF binding region
ZNF451	CpG island
ENSG00000151917	chromatin interactions
ENSG00000112208	chromatin interactions
ENSG00000235415	chromatin interactions
ENSG00000151914	chromatin interactions
ENSG00000226803	chromatin interactions
ENSG00000200224	chromatin interactions
ENSG00000112200	chromatin interactions
ENSG00000168116	chromatin interactions

Extended variants
information (count: 1200 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:1200 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6926980	chr6:56917538-56917539	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs371267376	chr6:56917549-56917550	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs570836745	chr6:56917553-56917554	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs373034964	chr6:56917576-56917577	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs534677385	chr6:56917606-56917607	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs377460775	chr6:56917628-56917629	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs370634563	chr6:56917642-56917643	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs201671262	chr6:56917643-56917644	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs61736730	chr6:56917644-56917645	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs200733855	chr6:56917665-56917666	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs374871236	chr6:56917669-56917670	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs140689285	chr6:56917723-56917724	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs185975368	chr6:56917730-56917731	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs368318052	chr6:56917768-56917769	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs575426890	chr6:56917799-56917800	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs142483287	chr6:56917810-56917811	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs151324271	chr6:56917811-56917812	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs191763941	chr6:56917812-56917813	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs202113597	chr6:56917813-56917814	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs140584319	chr6:56917824-56917825	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs372358467	chr6:56917828-56917829	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs150457710	chr6:56917833-56917834	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200880052	chr6:56917852-56917853	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371660552	chr6:56917868-56917869	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs144915340	chr6:56917880-56917881	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs559376813	chr6:56917886-56917887	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs61748913	chr6:56917907-56917908	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201130836	chr6:56917908-56917909	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs541943912	chr6:56917912-56917913	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564765697	chr6:56917920-56917921	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs140298655	chr6:56917929-56917930	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs145332241	chr6:56917933-56917934	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs376327619	chr6:56917945-56917946	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369813470	chr6:56918027-56918028	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs563477426	chr6:56918049-56918050	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs530461822	chr6:56918073-56918074	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs199923358	chr6:56918076-56918077	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113280264	chr6:56918091-56918092	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530581934	chr6:56918097-56918098	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs183292288	chr6:56918098-56918099	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs374302928	chr6:56918114-56918115	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs137898999	chr6:56918118-56918119	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs149454682	chr6:56918151-56918152	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs370971834	chr6:56918165-56918166	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs374610411	chr6:56918177-56918178	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs370357858	chr6:56918189-56918190	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs202210193	chr6:56918198-56918199	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs202203550	chr6:56918199-56918200	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs143004648	chr6:56918219-56918220	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs546621399	chr6:56918246-56918247	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Intellectual disability	21811512	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21509527	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD

Chromatin state (count:891 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56911600-56920800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:56911600-56920800	Weak transcription	Aorta	Aorta
3	chr6:56911600-56925000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:56911600-56935200	Weak transcription	Gastric	stomach
5	chr6:56911600-56939800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:56911800-56922200	Weak transcription	Right Ventricle	heart
7	chr6:56911800-56924200	Weak transcription	Colonic Mucosa	Colon
8	chr6:56911800-56930800	Weak transcription	Psoas Muscle	Psoas
9	chr6:56911800-56934200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:56911800-56936200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:56911800-56943000	Weak transcription	Esophagus	oesophagus
12	chr6:56913400-56921400	Strong transcription	HSMM	muscle
13	chr6:56913400-56924400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:56913400-56940600	Weak transcription	Brain Substantia Nigra	brain
15	chr6:56913600-56917600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:56913600-56919200	Weak transcription	Fetal Heart	heart
17	chr6:56913600-56920800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:56913600-56921600	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:56913600-56921800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:56913600-56924600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:56913600-56925600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:56913600-56926600	Weak transcription	Small Intestine	intestine
23	chr6:56913600-56931600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:56913600-56934000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:56913600-56941600	Weak transcription	Brain Anterior Caudate	brain
26	chr6:56913800-56918200	Weak transcription	NHLF	lung
27	chr6:56913800-56920600	Weak transcription	NHEK	skin
28	chr6:56913800-56928000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr6:56913800-56930600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:56914000-56919000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:56914000-56934600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:56914200-56920800	Strong transcription	HMEC	breast
33	chr6:56914200-56927000	Strong transcription	Osteobl	bone
34	chr6:56914200-56927400	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:56914200-56929600	Weak transcription	Fetal Brain Male	brain
36	chr6:56914200-56931000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr6:56914200-56934200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:56914400-56917800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:56914400-56919000	Strong transcription	Primary B cells from cord blood	blood
40	chr6:56914400-56921400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:56914400-56922200	Strong transcription	Liver	Liver
42	chr6:56914400-56923200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:56914400-56928600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:56914400-56929000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:56914400-56931800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:56914400-56935000	Weak transcription	Fetal Kidney	kidney
47	chr6:56914600-56917600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:56914600-56917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:56914600-56918400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:56914600-56927600	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links