Variant report

Variant	nsv526330
Chromosome Location	chr7:146342322-146371181
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:144849072..144851097-chr7:146354909..146357646,2	K562	blood:

Extended variants
information (count: 683 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:683 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7789802	chr7:146342322-146342323	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs111583568	chr7:146342343-146342344	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs564217467	chr7:146342356-146342357	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs344483	chr7:146342400-146342401	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs113271377	chr7:146342403-146342404	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs563550935	chr7:146342472-146342473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs529237353	chr7:146342479-146342480	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs187617481	chr7:146342494-146342495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs549311721	chr7:146342498-146342499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs373244183	chr7:146342526-146342527	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs117806399	chr7:146342531-146342532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs528486889	chr7:146342558-146342559	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs572492203	chr7:146342562-146342563	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs368537278	chr7:146342597-146342598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs111868054	chr7:146342611-146342612	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs554103532	chr7:146342653-146342654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs11982983	chr7:146342663-146342664	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs375745667	chr7:146342724-146342725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs192298542	chr7:146342765-146342766	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs35236867	chr7:146342774-146342775	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs550791827	chr7:146342790-146342791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs542693454	chr7:146342809-146342810	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs567605008	chr7:146342810-146342811	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142721884	chr7:146342817-146342818	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs553651583	chr7:146342832-146342833	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs35384532	chr7:146342862-146342863	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs72514831	chr7:146342863-146342864	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs397889834	chr7:146342878-146342879	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs571905609	chr7:146343046-146343047	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561619312	chr7:146343065-146343066	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532376927	chr7:146343080-146343081	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs114709679	chr7:146343107-146343108	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543625015	chr7:146343108-146343109	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs563436369	chr7:146343133-146343134	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs370644423	chr7:146343166-146343167	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542917858	chr7:146343191-146343192	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs115670750	chr7:146343202-146343203	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs184777181	chr7:146343246-146343247	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559609558	chr7:146343259-146343260	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs73470666	chr7:146343272-146343273	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs545433231	chr7:146343292-146343293	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs565018482	chr7:146343306-146343307	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374528864	chr7:146343355-146343356	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530947831	chr7:146343384-146343385	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs550678615	chr7:146343409-146343410	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs143987039	chr7:146343415-146343416	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs188802422	chr7:146343450-146343451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs199503223	chr7:146343465-146343466	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs10231742	chr7:146343533-146343534	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs2215327	chr7:146343554-146343555	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Glioblastoma multiforme	18628472	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	16272173	CNVD
Myxofibrosarcoma	16751306	CNVD
Stuttering	21108403	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	17133270	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Myelofibrosis	22110671	CNVD
Heart disease	21282601	CNVD
Lung adenocarcinoma	17086460	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pancreatitis	21956041	CNVD
Acute myeloid leukemia	16864856	CNVD
Gastric cancer	16891809	CNVD
Lung cancer	17086460	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20808228	CNVD
Schizophrenia	20838587	CNVD
Schizophrenia	20718829	CNVD
Neuropsychiatric disorder	21827697	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21509527	CNVD
Autism	20964600	CNVD
Epilepsy	17646849	CNVD
Mental retardation	19896112	CNVD
Epilepsy	20502679	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146342200-146343200	Enhancers	Fetal Thymus	thymus
2	chr7:146342400-146342600	Enhancers	Pancreas	Pancrea
3	chr7:146342400-146342600	Enhancers	Thymus	Thymus
4	chr7:146342400-146343400	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:146342400-146343400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:146342400-146345400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:146342600-146345200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:146342800-146344000	Weak transcription	Pancreas	Pancrea
9	chr7:146343200-146343400	Enhancers	Thymus	Thymus
10	chr7:146343200-146343600	Weak transcription	Fetal Thymus	thymus
11	chr7:146343400-146348800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:146343600-146345200	Enhancers	Fetal Thymus	thymus
13	chr7:146344000-146344200	Enhancers	Pancreas	Pancrea
14	chr7:146344200-146345000	Weak transcription	Pancreas	Pancrea
15	chr7:146345000-146345200	Enhancers	Pancreas	Pancrea
16	chr7:146345200-146348400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:146345200-146353200	Weak transcription	Fetal Thymus	thymus
18	chr7:146345400-146348200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:146348200-146352800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:146348400-146355000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:146348600-146355000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:146348800-146350400	Enhancers	Primary hematopoietic stem cells	blood
23	chr7:146350000-146351400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:146350400-146351400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr7:146350800-146351600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr7:146350800-146351600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:146351000-146351200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:146351200-146351400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:146351400-146352200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:146351400-146352600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:146351400-146354600	Enhancers	Primary hematopoietic stem cells	blood
32	chr7:146351600-146353600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr7:146352200-146352400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:146352400-146353600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:146352600-146353400	Enhancers	Fetal Kidney	kidney
36	chr7:146352600-146354000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:146352800-146353800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:146353000-146353400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:146353000-146353400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:146353000-146353400	Enhancers	Fetal Brain Male	brain
41	chr7:146353000-146353400	Enhancers	Fetal Lung	lung
42	chr7:146353000-146353800	Enhancers	Fetal Brain Female	brain
43	chr7:146353200-146353800	Enhancers	Fetal Thymus	thymus
44	chr7:146353200-146354000	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr7:146353400-146357800	Weak transcription	Fetal Lung	lung
46	chr7:146353400-146358000	Weak transcription	Fetal Brain Male	brain
47	chr7:146353600-146353800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:146353600-146354000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr7:146353800-146354800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:146353800-146355000	Weak transcription	Fetal Thymus	thymus

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