Variant report

Variant	nsv526397
Chromosome Location	chr9:105019080-105024768
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf107-6	chr9:105022537-105022636	NONHSAT133760
2	lnc-C9orf107-6	chr9:105022063-105022447	NONHSAT133760
3	lnc-C9orf107-6	chr9:105022063-105022447	FPKM1_group_33627_transcript_2
4	lnc-C9orf107-6	chr9:105022537-105022537	FPKM1_group_33627_transcript_2

Extended variants
information (count: 28 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77432582	chr9:105022063-105022064	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs4593608	chr9:105022095-105022096	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs10989930	chr9:105022127-105022128	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs10989931	chr9:105022159-105022160	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs532279518	chr9:105022160-105022161	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs10989932	chr9:105022194-105022195	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs185872808	chr9:105022222-105022223	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs10760860	chr9:105022236-105022237	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs10989933	chr9:105022255-105022256	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs35204798	chr9:105022290-105022291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs10739835	chr9:105022311-105022312	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs10739836	chr9:105022332-105022333	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs189942012	chr9:105022347-105022348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs35356836	chr9:105022365-105022366	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs542476047	chr9:105022414-105022415	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs562253747	chr9:105022424-105022425	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs77400165	chr9:105022544-105022545	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs182490506	chr9:105022552-105022553	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs532848626	chr9:105022569-105022570	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs546316745	chr9:105022597-105022598	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs566100671	chr9:105022602-105022603	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs528870724	chr9:105022628-105022629	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs190437556	chr9:105024666-105024667	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs563376706	chr9:105024679-105024680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs531675192	chr9:105024708-105024709	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs577117381	chr9:105024737-105024738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs551483983	chr9:105024766-105024767	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs6479096	chr9:105024768-105024769	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Neuroblastoma	20406844	CNVD
Schizophrenia	23813976	CNVD
Basal cell lymphoma	21115979	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105024600-105024800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr9:105024600-105026200	Enhancers	Fetal Kidney	kidney

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