Variant report

Variant	nsv526447
Chromosome Location	chr10:82941755-82945550
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547881538	chr10:82942005-82942006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs548027092	chr10:82942041-82942042	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs375629002	chr10:82942043-82942044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs559257507	chr10:82942096-82942097	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs376919316	chr10:82942141-82942142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs528058858	chr10:82942159-82942160	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs567784919	chr10:82942182-82942183	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs148350831	chr10:82942190-82942191	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs571279259	chr10:82942203-82942204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs141490223	chr10:82942208-82942209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs550739676	chr10:82942242-82942243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs560184209	chr10:82942246-82942247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs184817817	chr10:82942249-82942250	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs374280650	chr10:82942257-82942258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs566267339	chr10:82942339-82942340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs150853823	chr10:82942356-82942357	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs17093983	chr10:82942359-82942360	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs578011024	chr10:82942382-82942383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs189200190	chr10:82942395-82942396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs550678918	chr10:82942636-82942637	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs146055019	chr10:82942657-82942658	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs529483038	chr10:82942674-82942675	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs375346867	chr10:82942690-82942691	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs35283742	chr10:82942710-82942711	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs77372502	chr10:82942788-82942789	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs74413875	chr10:82942791-82942792	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs115055589	chr10:82942843-82942844	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs535013337	chr10:82942849-82942850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs181124457	chr10:82942947-82942948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs571542230	chr10:82942971-82942972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs537083267	chr10:82942997-82942998	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs557015384	chr10:82943011-82943012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs573811824	chr10:82943041-82943042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs536001418	chr10:82943046-82943047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs149956521	chr10:82943052-82943053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs114201808	chr10:82943129-82943130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs544962573	chr10:82943130-82943131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs144081050	chr10:82943143-82943144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs372660721	chr10:82943209-82943210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs116383061	chr10:82943266-82943267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544246107	chr10:82943295-82943296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs576516504	chr10:82943302-82943303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs148666086	chr10:82943337-82943338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186117048	chr10:82943362-82943363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs549555719	chr10:82943364-82943365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs555918624	chr10:82943421-82943422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs559689890	chr10:82943443-82943444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs528725801	chr10:82943480-82943481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs551772999	chr10:82943494-82943495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs571937748	chr10:82943509-82943510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:82942000-82942400	Enhancers	Pancreas	Pancrea
2	chr10:82942600-82943000	Enhancers	Pancreas	Pancrea
3	chr10:82943000-82944200	Weak transcription	Pancreas	Pancrea
4	chr10:82944200-82944400	ZNF genes & repeats	Pancreas	Pancrea

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