Variant report

Variant	nsv526631
Chromosome Location	chr7:11393134-11403994
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 450 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:450 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6958567	chr7:11393134-11393135	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
2	rs554055690	chr7:11393135-11393136	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs6978374	chr7:11393151-11393152	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs374677393	chr7:11393180-11393181	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs150198597	chr7:11393203-11393204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs377412463	chr7:11393204-11393205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs180784963	chr7:11393211-11393212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs184326494	chr7:11393226-11393227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs541525013	chr7:11393251-11393252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs567429087	chr7:11393266-11393267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs147673904	chr7:11393267-11393268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs527899840	chr7:11393301-11393302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs374967626	chr7:11393343-11393344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs188337146	chr7:11393348-11393349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs571105696	chr7:11393363-11393364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs181785363	chr7:11393364-11393365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550191817	chr7:11393376-11393377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs17164477	chr7:11393386-11393387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531730503	chr7:11393396-11393397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs545590376	chr7:11393469-11393470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs186443373	chr7:11393478-11393479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148725364	chr7:11393489-11393490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs568130060	chr7:11393501-11393502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142265705	chr7:11393522-11393523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs190606639	chr7:11393527-11393528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553717971	chr7:11393540-11393541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs577057472	chr7:11393548-11393549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs112368176	chr7:11393556-11393557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs17164478	chr7:11393561-11393562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs575639793	chr7:11393574-11393575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs541488227	chr7:11393583-11393584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs561840982	chr7:11393605-11393606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372123039	chr7:11393609-11393610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs527424655	chr7:11393616-11393617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs73066764	chr7:11393623-11393624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs151233073	chr7:11393660-11393661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs80316524	chr7:11393682-11393683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs1076224	chr7:11393694-11393695	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs531482143	chr7:11393723-11393724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs570026206	chr7:11393734-11393735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs60123897	chr7:11393777-11393778	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs75515590	chr7:11393790-11393791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs566148178	chr7:11393801-11393802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186275252	chr7:11393820-11393821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs201137617	chr7:11393835-11393836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs57551243	chr7:11393836-11393837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs200403827	chr7:11393838-11393839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs201516491	chr7:11393840-11393841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs368839137	chr7:11393841-11393842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs2354369	chr7:11393842-11393843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	22286061	CNVD
Non-small cell lung cancer	21829676	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Medulloblastoma	17653508	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Autism	22495309	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Glioblastoma multiforme	17002787	CNVD
Melanoma	20877625	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11383800-11397200	Weak transcription	Adipose Nuclei	Adipose
2	chr7:11392800-11393200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr7:11393000-11394800	Weak transcription	Liver	Liver
4	chr7:11393000-11401800	Weak transcription	Gastric	stomach
5	chr7:11395200-11395600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:11395600-11396000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:11396000-11396200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:11396200-11400200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:11397800-11398400	Weak transcription	Adipose Nuclei	Adipose
10	chr7:11400200-11401400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:11401800-11402000	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links