Variant report

Variant	nsv526632
Chromosome Location	chr9:93441674-93443531
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93440411..93442575-chr9:93562498..93565446,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165025	chromatin interactions

Extended variants
information (count: 33 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1173099	chr9:93441674-93441675	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs77862949	chr9:93441680-93441681	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs543469263	chr9:93441749-93441750	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs147418105	chr9:93441788-93441789	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs139764412	chr9:93441822-93441823	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs149967846	chr9:93441833-93441834	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs562269152	chr9:93441911-93441912	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs188121384	chr9:93441940-93441941	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs117889971	chr9:93441953-93441954	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs551248179	chr9:93441960-93441961	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs180886403	chr9:93441995-93441996	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs143864386	chr9:93442071-93442072	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs549806769	chr9:93442107-93442108	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs569851827	chr9:93442135-93442136	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs186338241	chr9:93442151-93442152	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs10993625	chr9:93442205-93442206	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
17	rs556312576	chr9:93442217-93442218	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs148618765	chr9:93442222-93442223	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs534537248	chr9:93442269-93442270	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs553837441	chr9:93442291-93442292	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs577845575	chr9:93442334-93442335	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs7873303	chr9:93442337-93442338	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs142100178	chr9:93442338-93442339	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs573565766	chr9:93442353-93442354	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs575835571	chr9:93442357-93442358	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs62558557	chr9:93442360-93442361	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs562267868	chr9:93442364-93442365	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs572579562	chr9:93442384-93442385	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs191086039	chr9:93442460-93442461	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs182244012	chr9:93442492-93442493	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs72735395	chr9:93442513-93442514	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs543515625	chr9:93442519-93442520	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs563657327	chr9:93442552-93442553	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Mental retardation	21693067	CNVD
Glioma	17123091	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
overgrowth syndrome	16570072	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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