Variant report

Variant	nsv526799
Chromosome Location	chr9:24332121-24385357
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 405 )
Associated
traits (count: 142 )

Variant overlapped rSNPs/rCNVs (count:405 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12345327	chr9:24332121-24332122	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs150453701	chr9:24332150-24332151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs10117626	chr9:24332192-24332193	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs527826032	chr9:24332196-24332197	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs13287184	chr9:24332200-24332201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs182519710	chr9:24332209-24332210	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs16908241	chr9:24332239-24332240	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs112837506	chr9:24332261-24332262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs569971048	chr9:24332267-24332268	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs532106532	chr9:24332297-24332298	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs10120558	chr9:24332340-24332341	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs185323691	chr9:24332406-24332407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs149641616	chr9:24332439-24332440	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs191014554	chr9:24332510-24332511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs143372135	chr9:24332515-24332516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs536450599	chr9:24332543-24332544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs184060775	chr9:24332551-24332552	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs576368184	chr9:24332564-24332565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs544996415	chr9:24332576-24332577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs188986009	chr9:24332598-24332599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs140555273	chr9:24351201-24351202	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs78514424	chr9:24351216-24351217	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs145637456	chr9:24351252-24351253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs116161616	chr9:24351259-24351260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs16908280	chr9:24351268-24351269	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs540069879	chr9:24351271-24351272	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs553678602	chr9:24351273-24351274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs181745798	chr9:24351278-24351279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs536158971	chr9:24351285-24351286	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs113461418	chr9:24351312-24351313	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs575618134	chr9:24351331-24351332	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs572796461	chr9:24351333-24351334	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs544266485	chr9:24351359-24351360	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs186764704	chr9:24351374-24351375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs539803842	chr9:24351380-24351381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs561805086	chr9:24351453-24351454	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs16908284	chr9:24351523-24351524	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs540084899	chr9:24351560-24351561	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs560385612	chr9:24351584-24351585	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs191834800	chr9:24351586-24351587	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs142866334	chr9:24351601-24351602	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs16908291	chr9:24351621-24351622	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs150632839	chr9:24351632-24351633	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs374500775	chr9:24351670-24351671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs571392337	chr9:24351686-24351687	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs183194233	chr9:24351691-24351692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs186448688	chr9:24351693-24351694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs567059989	chr9:24351695-24351696	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs10121862	chr9:24351701-24351702	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs371228392	chr9:24351738-24351739	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:142)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24331200-24332600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:24351200-24352000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:24351400-24353000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:24353000-24354200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:24354200-24355400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:24374800-24375400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:24375400-24377000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:24377000-24377200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:24379600-24379800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:24380000-24381200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:24381000-24381400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:24381000-24381600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:24381200-24381600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:24381200-24381800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:24381200-24381800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:24381200-24382000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:24381200-24382000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr9:24381800-24382400	Enhancers	Fetal Brain Female	brain
19	chr9:24382000-24382800	Enhancers	Fetal Brain Male	brain

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