Variant report

Variant	nsv526834
Chromosome Location	chr1:190769794-190773829
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RGS18-4	chr1:190768931-190770788	ENSG00000231175.1
2	lnc-RGS18-12	chr1:190773507-190773855	NONHSAT008511

Extended variants
information (count: 48 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10494643	chr1:190769794-190769795	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs559801221	chr1:190769849-190769850	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs147721717	chr1:190769929-190769930	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs573318784	chr1:190770015-190770016	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs545601788	chr1:190770022-190770023	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs565213302	chr1:190770070-190770071	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs555471640	chr1:190770104-190770105	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs531088302	chr1:190770111-190770112	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs564627464	chr1:190770116-190770117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs554719044	chr1:190770137-190770138	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs185838232	chr1:190770149-190770150	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs190361522	chr1:190770150-190770151	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs142502553	chr1:190770163-190770164	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs566576387	chr1:190770191-190770192	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs375215161	chr1:190770221-190770222	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs538426063	chr1:190770228-190770229	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs552326255	chr1:190770229-190770230	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs75940456	chr1:190770240-190770241	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs181009642	chr1:190770279-190770280	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs199667150	chr1:190770290-190770291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs491821	chr1:190770304-190770305	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs35637380	chr1:190770324-190770325	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs183723848	chr1:190770355-190770356	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs150276441	chr1:190770389-190770390	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs564760222	chr1:190770390-190770391	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs553160469	chr1:190770393-190770394	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs138932021	chr1:190770394-190770395	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs649580	chr1:190770403-190770404	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs12123621	chr1:190770411-190770412	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs565122628	chr1:190770440-190770441	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs541331537	chr1:190770449-190770450	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs148938248	chr1:190770501-190770502	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs142778637	chr1:190770550-190770551	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs544502060	chr1:190770585-190770586	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs561254241	chr1:190770605-190770606	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs528754566	chr1:190770623-190770624	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs77679630	chr1:190770645-190770646	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs546596220	chr1:190770778-190770779	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs151336965	chr1:190773522-190773523	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs140601984	chr1:190773561-190773562	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs540044523	chr1:190773588-190773589	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs77209184	chr1:190773629-190773630	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs570379775	chr1:190773687-190773688	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs536173260	chr1:190773709-190773710	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs537941929	chr1:190773715-190773716	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs115987054	chr1:190773773-190773774	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs188107454	chr1:190773779-190773780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs12038744	chr1:190773829-190773830	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:87)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17899364	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Lung adenocarcinoma	17086460	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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