Variant report

Variant	nsv526840
Chromosome Location	chr1:71912912-71918119
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:71914328..71914976-chr1:71927298..71927813,2	MCF-7	breast:
2	chr1:71913901..71916757-chr1:71917212..71919277,2	K562	blood:
3	chr1:71914181..71914987-chr1:71994857..71995392,2	MCF-7	breast:
4	chr1:71913901..71916757-chr1:71917212..71919277,2	K562	blood:
5	chr1:71915989..71918426-chr1:72103464..72106010,2	K562	blood:
6	chr1:71914108..71914677-chr16:85554351..85554911,2	MCF-7	breast:
7	chr1:71914037..71914921-chr1:71926795..71927704,3	MCF-7	breast:
8	chr1:71914328..71914851-chr1:71927223..71927813,2	MCF-7	breast:

No data

Extended variants
information (count: 16 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12123319	chr1:71912912-71912913	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs546651116	chr1:71912943-71912944	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs567179612	chr1:71912961-71912962	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs536145571	chr1:71912968-71912969	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs572431531	chr1:71917804-71917805	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs564187996	chr1:71917805-71917806	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs533172211	chr1:71917819-71917820	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs72674983	chr1:71917832-71917833	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs115776842	chr1:71917889-71917890	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs186874587	chr1:71917945-71917946	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs548223483	chr1:71917960-71917961	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs370619911	chr1:71917963-71917964	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs564141722	chr1:71918007-71918008	Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs192228156	chr1:71918076-71918077	Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs537378416	chr1:71918086-71918087	Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs12131309	chr1:71918119-71918120	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:107)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17133270	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
abnormal development	18461090	CNVD
Ewing''s sarcoma	17952124	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Poland''s syndrome	22110015	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21922591	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Effusion lymphoma	18079361	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	17952125	CNVD
body mass index	19812545	CNVD
Obesity	20935630	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71912600-71913000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:71917800-71918000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:71917800-71918200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links