Variant report

Variant	nsv527142
Chromosome Location	chr4:26528690-26530179
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26522451..26525005-chr4:26526111..26528805,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1532111	chr4:26528690-26528691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541075588	chr4:26528741-26528742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560179784	chr4:26528758-26528759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112394256	chr4:26528766-26528767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs552062875	chr4:26528780-26528781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs569052301	chr4:26528828-26528829	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs531396760	chr4:26528841-26528842	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs74839070	chr4:26528857-26528858	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs533766097	chr4:26528886-26528887	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs116160949	chr4:26529013-26529014	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs551463814	chr4:26529028-26529029	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs376322965	chr4:26529033-26529034	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs75148456	chr4:26529086-26529087	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs540148880	chr4:26529131-26529132	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs144868228	chr4:26529135-26529136	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs376187069	chr4:26529138-26529139	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs556447221	chr4:26529153-26529154	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs115952261	chr4:26529176-26529177	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs538697236	chr4:26529182-26529183	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs368273949	chr4:26529195-26529196	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs558906787	chr4:26529218-26529219	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs572421601	chr4:26529242-26529243	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs535512658	chr4:26529255-26529256	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs16878452	chr4:26529302-26529303	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs372362881	chr4:26529318-26529319	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs536577656	chr4:26529352-26529353	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs540540082	chr4:26529354-26529355	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs541013866	chr4:26529403-26529404	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs564531645	chr4:26529475-26529476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs147070008	chr4:26529514-26529515	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs546091827	chr4:26529570-26529571	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs562500598	chr4:26529591-26529592	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs531537980	chr4:26529607-26529608	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs548450820	chr4:26529638-26529639	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs78339503	chr4:26529655-26529656	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs139004665	chr4:26529695-26529696	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs138293590	chr4:26529743-26529744	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs547051511	chr4:26529744-26529745	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs376055082	chr4:26529774-26529775	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs554072403	chr4:26529786-26529787	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs375387683	chr4:26529817-26529818	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs570444094	chr4:26529903-26529904	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs539704917	chr4:26529908-26529909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs550453604	chr4:26529918-26529919	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs570063573	chr4:26529945-26529946	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs370469206	chr4:26529946-26529947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs59850942	chr4:26529947-26529948	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs555577915	chr4:26530110-26530111	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs572183605	chr4:26530167-26530168	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs2200840	chr4:26530179-26530180	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:57)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
Oral squamous cell carcinoma	17134496	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Lung cancer	18438408	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Cancer	21183584	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Breast cancer	17133270	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	22183965	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Olfactory neuroblastoma	18408657	CNVD
Burkitt''s lymphoma	20823134	CNVD
Cancer	22183965	CNVD
Gastric cancer	16891809	CNVD
Myelofibrosis	22110671	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26523200-26530800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:26527800-26528800	Weak transcription	HSMMtube	muscle
3	chr4:26527800-26530600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:26527800-26530600	Weak transcription	HSMM	muscle
5	chr4:26528800-26532200	Enhancers	HSMMtube	muscle
6	chr4:26530000-26531800	Enhancers	Cortex derived primary cultured neurospheres	brain

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