Variant report

Variant	nsv527238
Chromosome Location	chr9:73755602-73756531
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1888075	chr9:73755602-73755603	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs189852111	chr9:73755616-73755617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs76479904	chr9:73755665-73755666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs540466776	chr9:73755705-73755706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs4745057	chr9:73755712-73755713	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs192795204	chr9:73755731-73755732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs71505924	chr9:73755747-73755748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs562707051	chr9:73755754-73755755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs7847383	chr9:73755822-73755823	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs575695106	chr9:73755824-73755825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs7848316	chr9:73755838-73755839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs368709065	chr9:73755866-73755867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs1329778	chr9:73755913-73755914	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs564073002	chr9:73755920-73755921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs560477906	chr9:73755929-73755930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs527571429	chr9:73755954-73755955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs549256451	chr9:73755967-73755968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs369317068	chr9:73756051-73756052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs183945857	chr9:73756087-73756088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs6560179	chr9:73756118-73756119	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs549863029	chr9:73756136-73756137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs546311408	chr9:73756138-73756139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs542968283	chr9:73756142-73756143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs538275517	chr9:73756152-73756153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs560371340	chr9:73756164-73756165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs188278690	chr9:73756170-73756171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs529172356	chr9:73756182-73756183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs561129346	chr9:73756222-73756223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141408656	chr9:73756229-73756230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs200219015	chr9:73756263-73756264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs555757961	chr9:73756264-73756265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs1329777	chr9:73756274-73756275	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs573138589	chr9:73756283-73756284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs72731789	chr9:73756315-73756316	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs538044934	chr9:73756358-73756359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs578144633	chr9:73756388-73756389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs545456301	chr9:73756418-73756419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560492107	chr9:73756464-73756465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530673836	chr9:73756478-73756479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs543972111	chr9:73756480-73756481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs77327486	chr9:73756488-73756489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs1329776	chr9:73756531-73756532	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:58)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	20729466	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oral cancer	21386901	CNVD
Epilepsy	22083797	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Malignant melanoma	17260012	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73740400-73758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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