Variant report

Variant	nsv527269
Chromosome Location	chr10:83119210-83134434
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 282 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:282 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2771234	chr10:83119210-83119211	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs572256173	chr10:83119211-83119212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs189261537	chr10:83119241-83119242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs144548566	chr10:83119243-83119244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs533227779	chr10:83119252-83119253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs550105943	chr10:83119288-83119289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs181629705	chr10:83119338-83119339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs139259034	chr10:83119407-83119408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs376531208	chr10:83119437-83119438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs73313653	chr10:83119459-83119460	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs2771235	chr10:83119536-83119537	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs547551987	chr10:83119556-83119557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs533047602	chr10:83119561-83119562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs2771236	chr10:83119609-83119610	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs539697885	chr10:83119646-83119647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs185849315	chr10:83119706-83119707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs7075743	chr10:83119739-83119740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs188700414	chr10:83119749-83119750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs12260257	chr10:83119753-83119754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs2818817	chr10:83119763-83119764	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs534157729	chr10:83119794-83119795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs572546015	chr10:83119799-83119800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs12778693	chr10:83119819-83119820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554829761	chr10:83119853-83119854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs142052139	chr10:83119859-83119860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs181397102	chr10:83119881-83119882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs11189504	chr10:83119946-83119947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs71501974	chr10:83119949-83119950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs71007253	chr10:83119962-83119963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs11599456	chr10:83119990-83119991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs28727482	chr10:83120075-83120076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs151338493	chr10:83120100-83120101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs140605808	chr10:83120210-83120211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs71483347	chr10:83120211-83120212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs118183725	chr10:83120226-83120227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs530917653	chr10:83120235-83120236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551141870	chr10:83120241-83120242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528864983	chr10:83120256-83120257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs71483348	chr10:83120297-83120298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs71483349	chr10:83120306-83120307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542284570	chr10:83120322-83120323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs558944449	chr10:83120332-83120333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186158394	chr10:83120335-83120336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs568456925	chr10:83120357-83120358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs551065787	chr10:83120370-83120371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570709089	chr10:83120379-83120380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs645689	chr10:83120387-83120388	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs530174878	chr10:83120390-83120391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs10883052	chr10:83123004-83123005	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs567775367	chr10:83123012-83123013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:83118400-83120400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:83123000-83126600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:83125800-83128400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:83126600-83126800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:83126600-83127600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:83126800-83127200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links