Variant report

Variant	nsv527357
Chromosome Location	chr6:74253266-74325403
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1857)
CpG islands
(count:550)
Chromatin interactive
region (count:157)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:1857 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:74294945-74296405	K562	blood:	n/a	n/a
2	ARID3A	chr6:74276502-74277245	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:74318607-74318812	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:74295005-74295862	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:74258414-74258820	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:74320193-74320518	K562	blood:	n/a	n/a
7	ARID3A	chr6:74289650-74291137	HepG2	liver:	n/a	n/a
8	ARID3A	chr6:74289986-74290633	K562	blood:	n/a	n/a
9	ARID3A	chr6:74258154-74258499	K562	blood:	n/a	n/a
10	ARID3A	chr6:74274373-74275234	K562	blood:	n/a	n/a
11	ARID3A	chr6:74275895-74276290	HepG2	liver:	n/a	n/a
12	ARID3A	chr6:74320184-74320573	HepG2	liver:	n/a	n/a
13	ATF1	chr6:74295071-74295628	K562	blood:	n/a	n/a
14	ATF1	chr6:74274429-74274877	K562	blood:	n/a	n/a
15	ATF2	chr6:74289948-74290927	GM12878	blood:	n/a	n/a
16	ATF2	chr6:74294971-74296077	GM12878	blood:	n/a	n/a
17	ATF2	chr6:74289576-74290656	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF2	chr6:74269858-74271022	GM12878	blood:	n/a	n/a
19	ATF2	chr6:74269816-74271143	GM12878	blood:	n/a	n/a
20	ATF2	chr6:74289924-74290894	GM12878	blood:	n/a	n/a
21	ATF2	chr6:74295081-74295976	GM12878	blood:	n/a	n/a
22	ATF2	chr6:74275819-74276203	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr6:74289679-74290921	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF3	chr6:74294992-74295708	HCT-116	colon:	n/a	n/a
25	ATF3	chr6:74295150-74295695	A549	lung:	n/a	n/a
26	ATF3	chr6:74295039-74295705	HCT-116	colon:	n/a	n/a
27	ATF3	chr6:74290054-74290306	K562	blood:	n/a	n/a
28	ATF3	chr6:74295144-74295624	K562	blood:	n/a	n/a
29	ATF3	chr6:74290080-74290357	H1-hESC	embryonic stem cell:	n/a	n/a
30	ATF3	chr6:74290021-74290285	HepG2	liver:	n/a	n/a
31	ATF3	chr6:74289955-74290616	A549	lung:	n/a	n/a
32	ATF3	chr6:74289962-74290309	H1-hESC	embryonic stem cell:	n/a	n/a
33	ATF3	chr6:74289854-74290481	A549	lung:	n/a	n/a
34	ATF3	chr6:74289990-74290610	K562	blood:	n/a	n/a
35	BACH1	chr6:74289297-74289318	H1-hESC	embryonic stem cell:	n/a	n/a
36	BACH1	chr6:74287382-74287615	K562	blood:	n/a	n/a
37	BACH1	chr6:74289609-74290854	H1-hESC	embryonic stem cell:	n/a	chr6:74290233-74290247
38	BACH1	chr6:74307995-74308040	K562	blood:	n/a	n/a
39	BACH1	chr6:74289916-74290811	K562	blood:	n/a	chr6:74290233-74290247
40	BACH1	chr6:74303331-74303361	K562	blood:	n/a	n/a
41	BATF	chr6:74270662-74270933	GM12878	blood:	n/a	n/a
42	BATF	chr6:74269855-74270101	GM12878	blood:	n/a	n/a
43	BATF	chr6:74290080-74290546	GM12878	blood:	n/a	chr6:74290233-74290243
44	BATF	chr6:74270606-74270963	GM12878	blood:	n/a	n/a
45	BATF	chr6:74289999-74290622	GM12878	blood:	n/a	chr6:74290233-74290243
46	BATF	chr6:74269819-74270185	GM12878	blood:	n/a	n/a
47	BATF	chr6:74295275-74295489	GM12878	blood:	n/a	n/a
48	BCL11A	chr6:74290045-74290627	GM12878	blood:	n/a	chr6:74290502-74290511 chr6:74290236-74290245
49	BCL11A	chr6:74270610-74271035	GM12878	blood:	n/a	chr6:74270763-74270772
50	BCL11A	chr6:74290036-74290313	H1-hESC	embryonic stem cell:	n/a	chr6:74290236-74290245

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:74276973-74277023	SKMC	muscle:	n/a
2	chr6:74276973-74277023	SKMC	muscle:	n/a
3	chr6:74276973-74277023	HepG2	liver:	n/a
4	chr6:74295921-74295971	HIPEpiC	eye:	n/a
5	chr6:74276973-74277023	PrEC	prostate:	n/a
6	chr6:74289980-74290030	NB4	blood:	n/a
7	chr6:74295921-74295971	GM12892	blood:	n/a
8	chr6:74289980-74290030	SAEC	small airway:	n/a
9	chr6:74290516-74290566	GM19239	blood:	n/a
10	chr6:74289980-74290030	NH-A	brain:	n/a
11	chr6:74295921-74295971	HEK293	kidney:	embryo
12	chr6:74290516-74290566	BE2_C	brain:	n/a
13	chr6:74282434-74282484	LNCaP	prostate:	n/a
14	chr6:74282434-74282484	AG10803	skin:	n/a
15	chr6:74268449-74268499	HRE	kidney:	n/a
16	chr6:74290220-74290270	GM19239	blood:	n/a
17	chr6:74268449-74268499	Caco-2	colon:	n/a
18	chr6:74295921-74295971	NH-A	brain:	n/a
19	chr6:74303635-74303685	NB4	blood:	n/a
20	chr6:74290220-74290270	HRCEpiC	kidney:	n/a
21	chr6:74276973-74277023	HRE	kidney:	n/a
22	chr6:74276973-74277023	HIPEpiC	eye:	n/a
23	chr6:74289980-74290030	Jurkat	blood:	n/a
24	chr6:74282434-74282484	PFSK-1	brain:	n/a
25	chr6:74268449-74268499	NH-A	brain:	n/a
26	chr6:74290516-74290566	NHDF-neo	bronchial:	n/a
27	chr6:74289980-74290030	U87	brain:	n/a
28	chr6:74295921-74295971	SKMC	muscle:	n/a
29	chr6:74295921-74295971	RPTEC	kidney:	n/a
30	chr6:74289980-74290030	SK-N-SH	brain:	n/a
31	chr6:74289464-74289514	HUVEC	blood vessel:	n/a
32	chr6:74268449-74268499	ProgFib	skin:	n/a
33	chr6:74290220-74290270	HUVEC	blood vessel:	n/a
34	chr6:74290220-74290270	AG04449	skin:	fetal
35	chr6:74289980-74290030	AoSMC	blood vessel:	n/a
36	chr6:74282434-74282484	HCT-116	colon:	n/a
37	chr6:74290220-74290270	T-47D	breast:	n/a
38	chr6:74282434-74282484	HepG2	liver:	n/a
39	chr6:74268449-74268499	HRPEpiC	eye:	n/a
40	chr6:74268449-74268499	GM06990	blood:	n/a
41	chr6:74303635-74303685	HRCEpiC	kidney:	n/a
42	chr6:74289980-74290030	Hela-S3	cervix:	n/a
43	chr6:74295921-74295971	MCF-7	breast:	n/a
44	chr6:74290220-74290270	GM12892	blood:	n/a
45	chr6:74289464-74289514	BE2_C	brain:	n/a
46	chr6:74303635-74303685	Hepatocyte	liver:	n/a
47	chr6:74290220-74290270	AG04450	lung:	fetal
48	chr6:74290516-74290566	HIPEpiC	eye:	n/a
49	chr6:74295921-74295971	HUVEC	blood vessel:	n/a
50	chr6:74268449-74268499	MCF10A-Er-Src	breast:	n/a

(count:157 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr6:74230581..74232832-chr6:74306353..74309199,3	MCF-7	breast:
2	chr6:74270566..74272311-chr6:74274568..74277117,2	K562	blood:
3	chr6:74227140..74231865-chr6:74277040..74281960,6	K562	blood:
4	chr6:74321340..74324338-chr6:74361477..74364146,2	MCF-7	breast:
5	chr6:74293523..74296291-chr6:74302711..74304704,2	K562	blood:
6	chr6:74269217..74272384-chr6:74272449..74274240,3	K562	blood:
7	chr6:74240266..74241982-chr6:74289270..74292140,2	K562	blood:
8	chr6:74320124..74323054-chr6:74351713..74353933,2	MCF-7	breast:
9	chr6:74242952..74244807-chr6:74314852..74317573,2	K562	blood:
10	chr6:74315170..74318004-chr6:74318140..74320478,4	K562	blood:
11	chr6:74160192..74161982-chr6:74293563..74295247,2	MCF-7	breast:
12	chr6:74229410..74231742-chr6:74312645..74314509,2	MCF-7	breast:
13	chr6:74303250..74306152-chr6:74307378..74309370,2	K562	blood:
14	chr6:74305928..74307842-chr6:74313274..74316085,2	K562	blood:
15	chr6:74229266..74230904-chr6:74278283..74280721,3	MCF-7	breast:
16	chr6:74287302..74289966-chr6:74361696..74364056,2	MCF-7	breast:
17	chr6:74310744..74313637-chr6:74316920..74318819,2	MCF-7	breast:
18	chr6:74229155..74231796-chr6:74303421..74306313,3	MCF-7	breast:
19	chr6:74221323..74236726-chr6:74306065..74338770,101	K562	blood:
20	chr6:74288220..74292842-chr6:74293561..74299022,14	K562	blood:
21	chr6:74233242..74235522-chr6:74280343..74281845,2	MCF-7	breast:
22	chr6:74274687..74279711-chr6:74293912..74296161,4	K562	blood:
23	chr6:74250116..74252715-chr6:74255557..74258445,2	K562	blood:
24	chr6:74229593..74233524-chr6:74300162..74303155,5	MCF-7	breast:
25	chr6:74164533..74167289-chr6:74290489..74292657,2	MCF-7	breast:
26	chr6:74257538..74259934-chr6:74264799..74266356,2	K562	blood:
27	chr6:74305928..74307842-chr6:74313274..74316085,2	K562	blood:
28	chr6:74229375..74231443-chr6:74255179..74257233,2	K562	blood:
29	chr6:74229152..74230830-chr6:74267038..74269004,2	MCF-7	breast:
30	chr6:74286237..74288439-chr6:74291393..74292991,3	K562	blood:
31	chr6:74294601..74296941-chr6:74314591..74316170,2	K562	blood:
32	chr6:74225454..74225974-chr6:74319966..74320496,2	K562	blood:
33	chr6:74269117..74271723-chr6:74288666..74291103,2	K562	blood:
34	chr6:74289400..74291703-chr6:74315095..74317894,2	K562	blood:
35	chr6:74318714..74320214-chr6:74328892..74331642,2	MCF-7	breast:
36	chr17:58601960..58604487-chr6:74288896..74291198,2	MCF-7	breast:
37	chr6:74294343..74296557-chr6:74348201..74349804,2	MCF-7	breast:
38	chr6:74228936..74230548-chr6:74302607..74304232,2	MCF-7	breast:
39	chr6:74273534..74278713-chr6:74287099..74290342,5	K562	blood:
40	chr6:74272516..74275188-chr6:74290634..74292979,3	K562	blood:
41	chr3:49208726..49209579-chr6:74290200..74290971,2	HCT-116	colon:
42	chr6:74228296..74231283-chr6:74268216..74270797,2	K562	blood:
43	chr6:74313554..74316552-chr6:74335667..74338657,2	K562	blood:
44	chr6:74287356..74290171-chr6:74314710..74316586,2	MCF-7	breast:
45	chr6:74277679..74279983-chr6:74283539..74285265,2	K562	blood:
46	chr6:74230178..74232032-chr6:74283408..74285890,2	MCF-7	breast:
47	chr6:74274687..74279711-chr6:74293912..74296161,4	K562	blood:
48	chr6:74313794..74316156-chr6:74316863..74318391,2	MCF-7	breast:
49	chr6:74223173..74224684-chr6:74258116..74259948,2	K562	blood:
50	chr6:74288307..74290175-chr6:74362549..74365093,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTO1-1	chr6:74280010-74280319	ENSG00000229862.1
2	lnc-MTO1-1	chr6:74280010-74280256	ENSG00000229862.1
3	lnc-MTO1-2	chr6:74268368-74268761	NONHSAT113575

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	SLC17A5	hsa-miR-124-3p	chr6:74304738-74304732
2	SLC17A5	hsa-miR-124-3p	chr6:74304732-74304755

Variant related genes	Relation type
RPS27P15	TF binding region
RPS27P15	CpG island
ENSG00000185909	chromatin interactions
ENSG00000223967	chromatin interactions
ENSG00000062725	chromatin interactions
ENSG00000259349	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000229862	chromatin interactions
ENSG00000119899	chromatin interactions

Extended variants
information (count: 3041 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:3041 , 50 per page) page: 1 2 3 4 5 6 7 ... 61

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6921927	chr6:74253266-74253267	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs537648775	chr6:74253279-74253280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149578854	chr6:74253324-74253325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572381339	chr6:74253345-74253346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114290675	chr6:74253381-74253382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535424605	chr6:74253421-74253422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs553831828	chr6:74253476-74253477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138786256	chr6:74253485-74253486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs540103730	chr6:74253512-74253513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs577632475	chr6:74253548-74253549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs59916971	chr6:74253549-74253550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs397794891	chr6:74253558-74253559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs558175487	chr6:74253559-74253560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs541994320	chr6:74253562-74253563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs34081147	chr6:74253581-74253582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs576577215	chr6:74253600-74253601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs144341570	chr6:74253629-74253630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543699060	chr6:74253862-74253863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs192737773	chr6:74253937-74253938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs35759825	chr6:74253969-74253970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182553564	chr6:74253998-74253999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111989925	chr6:74254038-74254039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs559291778	chr6:74254049-74254050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs141236174	chr6:74254096-74254097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs71000132	chr6:74254097-74254098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201280015	chr6:74254098-74254099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs566300255	chr6:74254138-74254139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs533167460	chr6:74254179-74254180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs116060045	chr6:74254285-74254286	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs187907340	chr6:74254315-74254316	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs531522524	chr6:74254322-74254323	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs549741870	chr6:74254342-74254343	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs192421799	chr6:74254392-74254393	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs535514996	chr6:74254423-74254424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs547530264	chr6:74254444-74254445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs184422359	chr6:74254448-74254449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs529351093	chr6:74254460-74254461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs539442996	chr6:74254472-74254473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs528783465	chr6:74254476-74254477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs374870402	chr6:74254478-74254479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs558419730	chr6:74254483-74254484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs148580814	chr6:74254498-74254499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs12663568	chr6:74254606-74254607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs544423142	chr6:74254609-74254610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12663569	chr6:74254614-74254615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs12663581	chr6:74254634-74254635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs12663582	chr6:74254649-74254650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs142028291	chr6:74254664-74254665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs150659026	chr6:74254666-74254667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs541089468	chr6:74254671-74254672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Medullary thyroid carcinoma	18765511	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Lung adenocarcinoma	21935476	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2035 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74248200-74256600	Weak transcription	GM12878-XiMat	blood
2	chr6:74250200-74257800	Weak transcription	HepG2	liver
3	chr6:74253000-74257400	Weak transcription	Liver	Liver
4	chr6:74254200-74254400	Enhancers	Stomach Smooth Muscle	stomach
5	chr6:74256600-74257000	Enhancers	GM12878-XiMat	blood
6	chr6:74256800-74257000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:74257000-74258000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:74257400-74258000	Enhancers	Liver	Liver
9	chr6:74257800-74259200	Enhancers	HepG2	liver
10	chr6:74258000-74258200	Flanking Active TSS	Liver	Liver
11	chr6:74258000-74259600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:74258000-74260000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:74258000-74260200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:74258200-74260200	Enhancers	Liver	Liver
15	chr6:74259600-74260000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:74259800-74260000	Weak transcription	Right Atrium	heart
17	chr6:74260000-74260200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:74260000-74260200	Enhancers	Right Atrium	heart
19	chr6:74260200-74265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:74262400-74266400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:74264600-74264800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:74264600-74264800	Enhancers	K562	blood
23	chr6:74264800-74267200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:74265000-74266600	Weak transcription	K562	blood
25	chr6:74265600-74269600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:74265800-74266000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:74265800-74266600	Enhancers	Brain Hippocampus Middle	brain
28	chr6:74265800-74267400	Enhancers	Fetal Heart	heart
29	chr6:74265800-74269600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:74266000-74266600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:74266000-74275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:74266400-74266600	Enhancers	HSMMtube	muscle
33	chr6:74266400-74266800	Enhancers	Brain Angular Gyrus	brain
34	chr6:74266400-74267000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:74266400-74267400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:74266400-74267600	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr6:74266400-74269200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr6:74266400-74269400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:74266600-74266800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:74266600-74266800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:74266600-74266800	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr6:74266600-74266800	Enhancers	A549	lung
43	chr6:74266600-74267000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr6:74266600-74267200	Enhancers	K562	blood
45	chr6:74266600-74267600	Weak transcription	HSMMtube	muscle
46	chr6:74266600-74268000	Enhancers	Brain Cingulate Gyrus	brain
47	chr6:74266600-74270400	Enhancers	HepG2	liver
48	chr6:74266800-74267000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:74266800-74267000	Enhancers	Brain Hippocampus Middle	brain
50	chr6:74266800-74268400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links