Variant report

Variant	nsv527394
Chromosome Location	chr6:92061701-92067726
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:128 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9353824	chr6:92061701-92061702	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs544542343	chr6:92061748-92061749	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs147120457	chr6:92061749-92061750	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs369726354	chr6:92061790-92061791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs543959774	chr6:92061808-92061809	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs564200433	chr6:92061823-92061824	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs532956151	chr6:92061843-92061844	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs148155105	chr6:92061853-92061854	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs540270425	chr6:92061882-92061883	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs560197581	chr6:92061889-92061890	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529152615	chr6:92061903-92061904	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs549278480	chr6:92061904-92061905	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs184419937	chr6:92061932-92061933	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs189493755	chr6:92061933-92061934	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs34029037	chr6:92061962-92061963	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs551561125	chr6:92061963-92061964	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs571448803	chr6:92061966-92061967	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs534038741	chr6:92062041-92062042	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs553704236	chr6:92062058-92062059	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs58565535	chr6:92062130-92062131	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs536513726	chr6:92062150-92062151	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs7768509	chr6:92062172-92062173	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs576541166	chr6:92062174-92062175	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs140719716	chr6:92062190-92062191	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs192986601	chr6:92062229-92062230	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs564342140	chr6:92062239-92062240	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs577769879	chr6:92062275-92062276	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs540331655	chr6:92062276-92062277	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs560160517	chr6:92062281-92062282	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs184314652	chr6:92062344-92062345	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs542542252	chr6:92062365-92062366	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs562828198	chr6:92062369-92062370	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs531401542	chr6:92062391-92062392	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs532079160	chr6:92062536-92062537	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs551122930	chr6:92062577-92062578	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs532655765	chr6:92062578-92062579	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs6911257	chr6:92062606-92062607	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113199726	chr6:92062635-92062636	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs527753091	chr6:92062674-92062675	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs547501314	chr6:92062677-92062678	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7749168	chr6:92062706-92062707	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs569122606	chr6:92062730-92062731	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs189646574	chr6:92062757-92062758	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs370320177	chr6:92062770-92062771	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs550206427	chr6:92062781-92062782	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs112361358	chr6:92062872-92062873	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs138555986	chr6:92062916-92062917	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs141611839	chr6:92062921-92062922	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs533835404	chr6:92062939-92062940	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs562916067	chr6:92062990-92062991	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Developmental delay	19490664	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Adrenocortical carcinoma	18281524	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92061400-92062800	Enhancers	Fetal Lung	lung
2	chr6:92061600-92061800	Enhancers	Fetal Stomach	stomach
3	chr6:92061800-92064200	Weak transcription	Fetal Stomach	stomach
4	chr6:92062600-92063000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:92064200-92065000	Enhancers	Fetal Stomach	stomach

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