Variant report

Variant	nsv527430
Chromosome Location	chr3:42534042-42557199
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:533)
CpG islands
(count:976)
Chromatin interactive
region (count:29)
LncRNA
region (count:17)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:533 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:42543260-42543326	HepG2	liver:	n/a	n/a
2	ATF2	chr3:42543670-42544060	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF3	chr3:42543232-42543433	K562	blood:	n/a	n/a
4	BACH1	chr3:42543207-42544084	H1-hESC	embryonic stem cell:	n/a	n/a
5	BCLAF1	chr3:42533876-42534327	GM12878	blood:	n/a	n/a
6	BHLHE40	chr3:42550180-42550442	K562	blood:	n/a	n/a
7	BHLHE40	chr3:42543250-42543741	K562	blood:	n/a	chr3:42543286-42543302
8	BRCA1	chr3:42538376-42538772	Hela-S3	cervix:	n/a	n/a
9	CCNT2	chr3:42543048-42543664	K562	blood:	n/a	n/a
10	CCNT2	chr3:42543936-42544338	K562	blood:	n/a	chr3:42544085-42544094 chr3:42543993-42544002
11	CEBPB	chr3:42543757-42544087	H1-hESC	embryonic stem cell:	n/a	n/a
12	CHD2	chr3:42538470-42538974	H1-hESC	embryonic stem cell:	n/a	n/a
13	CHD2	chr3:42538520-42538817	Hela-S3	cervix:	n/a	n/a
14	CHD2	chr3:42543845-42544207	H1-hESC	embryonic stem cell:	n/a	n/a
15	CHD2	chr3:42543870-42544191	K562	blood:	n/a	n/a
16	CHD2	chr3:42543362-42543402	K562	blood:	n/a	n/a
17	CREB1	chr3:42543958-42544211	A549	lung:	n/a	n/a
18	CREB1	chr3:42543637-42544293	HepG2	liver:	n/a	n/a
19	CTBP2	chr3:42542581-42544333	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr3:42543132-42543487	K562	blood:	n/a	n/a
21	CTCF	chr3:42543260-42543410	GM12865	blood:	n/a	n/a
22	CTCF	chr3:42543176-42543493	GM19238	blood:	n/a	n/a
23	CTCF	chr3:42543220-42543370	GM12870	blood:	n/a	n/a
24	CTCF	chr3:42543260-42543410	GM12874	blood:	n/a	n/a
25	CTCF	chr3:42543220-42543370	HRPEpiC	eye:	n/a	n/a
26	CTCF	chr3:42543280-42543430	AoAF	blood vessel:	n/a	n/a
27	CTCF	chr3:42544078-42544178	MCF-7	breast:	n/a	n/a
28	CTCF	chr3:42543193-42543481	GM19240	blood:	n/a	n/a
29	CTCF	chr3:42543260-42543410	BJ	skin:	n/a	n/a
30	CTCF	chr3:42548884-42548971	LNCaP	prostate:	n/a	chr3:42548939-42548947
31	CTCF	chr3:42543220-42543370	GM12873	blood:	n/a	n/a
32	CTCF	chr3:42543240-42543390	AoAF	blood vessel:	n/a	n/a
33	CTCF	chr3:42543260-42543410	NHEK	skin:	n/a	n/a
34	CTCF	chr3:42548979-42549079	MCF-7	breast:	n/a	chr3:42549029-42549042
35	CTCF	chr3:42543239-42543402	GM20000	blood:	n/a	n/a
36	CTCF	chr3:42556800-42556950	HMEC	breast:	n/a	n/a
37	CTCF	chr3:42543280-42543430	HAc	cerebellar:	n/a	n/a
38	CTCF	chr3:42543215-42543466	ProgFib	skin:	n/a	n/a
39	CTCF	chr3:42543144-42543546	HepG2	liver:	n/a	n/a
40	CTCF	chr3:42543199-42543471	Lung_OC	lung:	n/a	n/a
41	CTCF	chr3:42543180-42543330	GM12878	blood:	n/a	n/a
42	CTCF	chr3:42543220-42543370	GM12869	blood:	n/a	n/a
43	CTCF	chr3:42543240-42543390	GM12868	blood:	n/a	n/a
44	CTCF	chr3:42543153-42543487	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr3:42543220-42543370	HCM	heart:	n/a	n/a
46	CTCF	chr3:42543220-42543370	GM12871	blood:	n/a	n/a
47	CTCF	chr3:42549508-42549668	MCF-7	breast:	n/a	chr3:42549565-42549574
48	CTCF	chr3:42543211-42543480	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr3:42543222-42543432	HepG2	liver:	n/a	n/a
50	CTCF	chr3:42543240-42543390	GM12866	blood:	n/a	n/a

(count:976 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:42544082-42544132	SK-N-SH	brain:	n/a
2	chr3:42544060-42544110	AG09309	skin:	n/a
3	chr3:42544082-42544132	NH-A	brain:	n/a
4	chr3:42543566-42543616	IMR90	lung:	fetal
5	chr3:42544618-42544668	NT2-D1	testis:	n/a
6	chr3:42544020-42544070	T-47D	breast:	n/a
7	chr3:42544618-42544668	PANC-1	pancreas:	n/a
8	chr3:42543530-42543580	AoSMC	blood vessel:	n/a
9	chr3:42538831-42538881	HEEpiC	esophagus:	n/a
10	chr3:42544060-42544110	HCF	heart:	n/a
11	chr3:42543933-42543983	SK-N-SH	brain:	n/a
12	chr3:42543530-42543580	GM12891	blood:	n/a
13	chr3:42544131-42544181	SKMC	muscle:	n/a
14	chr3:42544131-42544181	HL-60	blood:	n/a
15	chr3:42544101-42544151	HCT-116	colon:	n/a
16	chr3:42546922-42546972	T-47D	breast:	n/a
17	chr3:42544067-42544117	HRE	kidney:	n/a
18	chr3:42544400-42544450	MCF10A-Er-Src	breast:	n/a
19	chr3:42544400-42544450	HCF	heart:	n/a
20	chr3:42543566-42543616	A549	lung:	n/a
21	chr3:42544067-42544117	HCPEpiC	choroid plexus:	n/a
22	chr3:42544082-42544132	SK-N-SH_RA	brain:	n/a
23	chr3:42543933-42543983	ECC-1	luminal epithelium:	n/a
24	chr3:42544618-42544668	AG04449	skin:	fetal
25	chr3:42544101-42544151	Caco-2	colon:	n/a
26	chr3:42544131-42544181	LNCaP	prostate:	n/a
27	chr3:42544131-42544181	ovcar-3	ovarian:	n/a
28	chr3:42546922-42546972	PANC-1	pancreas:	n/a
29	chr3:42544082-42544132	AG10803	skin:	n/a
30	chr3:42544400-42544450	GM12878	blood:	n/a
31	chr3:42543566-42543616	HRCEpiC	kidney:	n/a
32	chr3:42544060-42544110	AG04450	lung:	fetal
33	chr3:42542232-42542282	T-47D	breast:	n/a
34	chr3:42544618-42544668	AG04450	lung:	fetal
35	chr3:42538831-42538881	SK-N-SH	brain:	n/a
36	chr3:42543469-42543519	NB4	blood:	n/a
37	chr3:42544400-42544450	SKMC	muscle:	n/a
38	chr3:42544618-42544668	HNPCEpiC	eye:	n/a
39	chr3:42543469-42543519	HIPEpiC	eye:	n/a
40	chr3:42544067-42544117	Jurkat	blood:	n/a
41	chr3:42544400-42544450	SAEC	small airway:	n/a
42	chr3:42538831-42538881	HEK293	kidney:	embryo
43	chr3:42544060-42544110	NB4	blood:	n/a
44	chr3:42544131-42544181	SK-N-SH	brain:	n/a
45	chr3:42544400-42544450	HCT-116	colon:	n/a
46	chr3:42543933-42543983	BE2_C	brain:	n/a
47	chr3:42543933-42543983	HUVEC	blood vessel:	n/a
48	chr3:42542232-42542282	NHBE	bronchial:	n/a
49	chr3:42543469-42543519	T-47D	breast:	n/a
50	chr3:42544131-42544181	GM06990	blood:	n/a

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:42518552..42520973-chr3:42544499..42546784,2	MCF-7	breast:
2	chr3:42543941..42547920-chr3:42554474..42558044,4	K562	blood:
3	chr3:42534603..42536187-chr3:42541719..42544103,2	K562	blood:
4	chr3:42556101..42557803-chr3:42559500..42561568,2	K562	blood:
5	chr3:42533518..42535270-chr3:42539632..42541675,2	MCF-7	breast:
6	chr3:42542597..42545270-chr3:42568668..42571142,2	K562	blood:
7	chr3:42540798..42542502-chr3:42574442..42577376,2	K562	blood:
8	chr3:42200703..42202768-chr3:42543945..42545454,2	MCF-7	breast:
9	chr3:42546908..42549650-chr3:42559175..42561054,2	MCF-7	breast:
10	chr3:42538031..42540547-chr3:42542886..42545653,3	MCF-7	breast:
11	chr3:42543941..42547920-chr3:42554474..42558044,4	K562	blood:
12	chr3:42542480..42545383-chr3:42547014..42548808,2	MCF-7	breast:
13	chr3:42534099..42536839-chr3:42539322..42541423,2	MCF-7	breast:
14	chr3:42518620..42520531-chr3:42538511..42540228,2	MCF-7	breast:
15	chr3:42531149..42533028-chr3:42536524..42539427,2	K562	blood:
16	chr3:42542139..42544178-chr3:42546531..42549362,2	K562	blood:
17	chr3:42555090..42557381-chr3:42567941..42570291,2	MCF-7	breast:
18	chr3:42516207..42518241-chr3:42534385..42536870,2	MCF-7	breast:
19	chr3:42542738..42545212-chr3:42547259..42551511,4	MCF-7	breast:
20	chr3:42538804..42541639-chr3:42648578..42650101,2	MCF-7	breast:
21	chr3:42542637..42545106-chr3:42553030..42555271,2	K562	blood:
22	chr3:42533518..42535270-chr3:42539632..42541675,2	MCF-7	breast:
23	chr3:42529090..42533443-chr3:42533713..42536852,4	MCF-7	breast:
24	chr3:42542685..42546162-chr3:42551658..42554598,5	MCF-7	breast:
25	chr3:42552045..42554738-chr3:42559579..42561082,2	K562	blood:
26	chr3:42534099..42536839-chr3:42539322..42541423,2	MCF-7	breast:
27	chr3:42543515..42546582-chr3:42549981..42551633,3	MCF-7	breast:
28	chr3:42529189..42533440-chr3:42542111..42547805,7	MCF-7	breast:
29	chr3:42530093..42535343-chr3:42545492..42550064,6	MCF-7	breast:

(count:17 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEC22C-1	chr3:42550797-42550871	ENSG00000232354.3
2	lnc-SEC22C-1	chr3:42553550-42553803	ENSG00000232354.3
3	lnc-SEC22C-1	chr3:42548142-42548334	NONHSAT089224
4	lnc-SEC22C-1	chr3:42548184-42548334	ENSG00000232354.3
5	lnc-SEC22C-1	chr3:42553207-42553401	ENSG00000232354.3
6	lnc-SEC22C-1	chr3:42553207-42553401	ENSG00000232354.3
7	lnc-SEC22C-1	chr3:42553550-42553803	ENSG00000232354.3
8	lnc-SEC22C-1	chr3:42555097-42555327	ENSG00000232354.3
9	lnc-SEC22C-1	chr3:42553550-42553784	NONHSAT089224
10	lnc-SEC22C-1	chr3:42548016-42548334	ENSG00000232354.3
11	lnc-SS18L2-4	chr3:42541536-42541908	NONHSAT089220
12	lnc-SEC22C-1	chr3:42553550-42553784	ENSG00000232354.3
13	lnc-SEC22C-1	chr3:42553586-42553803	ENSG00000232354.3
14	lnc-SS18L2-4	chr3:42541536-42541638	NONHSAT089221
15	lnc-SEC22C-1	chr3:42550304-42550427	ENSG00000232354.3
16	lnc-SEC22C-1	chr3:42553676-42553784	ENSG00000232354.3
17	lnc-SEC22C-1	chr3:42548142-42548334	ENSG00000232354.3

No data

Variant related genes	Relation type
VIPR1	TF binding region
VIPR1	CpG island
ENSG00000182606	chromatin interactions
ENSG00000232354	chromatin interactions
ENSG00000114812	chromatin interactions

Extended variants
information (count: 891 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:891 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs342520	chr3:42534042-42534043	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs555931969	chr3:42534066-42534067	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs575344510	chr3:42534097-42534098	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs544251919	chr3:42534098-42534099	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs560968156	chr3:42534140-42534141	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs72861297	chr3:42534175-42534176	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs540605239	chr3:42534183-42534184	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs202203111	chr3:42534206-42534207	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs145260477	chr3:42534270-42534271	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs574198174	chr3:42534329-42534330	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs114959957	chr3:42534334-42534335	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs552842176	chr3:42534355-42534356	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs72861301	chr3:42534366-42534367	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs58475551	chr3:42534390-42534391	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs548276260	chr3:42534413-42534414	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs568134669	chr3:42534423-42534424	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs184586486	chr3:42534456-42534457	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs137868745	chr3:42534460-42534461	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs73067238	chr3:42534488-42534489	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs539309141	chr3:42534545-42534546	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs555944259	chr3:42534614-42534615	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs375019340	chr3:42534655-42534656	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs140904860	chr3:42534664-42534665	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs566949391	chr3:42534670-42534671	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs113508101	chr3:42534696-42534697	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs117379408	chr3:42534697-42534698	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs574852638	chr3:42534762-42534763	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs112054281	chr3:42534802-42534803	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs76692378	chr3:42534807-42534808	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs577619431	chr3:42534820-42534821	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs546470325	chr3:42534870-42534871	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs563093082	chr3:42534951-42534952	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs35016638	chr3:42534976-42534977	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs531979059	chr3:42534977-42534978	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs73067240	chr3:42534989-42534990	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs191847000	chr3:42534995-42534996	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs527372776	chr3:42535029-42535030	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs112126054	chr3:42535053-42535054	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs574621595	chr3:42535058-42535059	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs547088169	chr3:42535064-42535065	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs541808044	chr3:42535113-42535114	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs145144117	chr3:42535154-42535155	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs570381219	chr3:42535279-42535280	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs114921177	chr3:42535333-42535334	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs143371910	chr3:42535438-42535439	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs569598884	chr3:42535463-42535464	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs535293517	chr3:42535488-42535489	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs555534027	chr3:42535499-42535500	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs568499838	chr3:42535510-42535511	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs534256909	chr3:42535528-42535529	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Neuroblastoma	18923191	CNVD
Colorectal cancer	21297112	CNVD
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Wilms tumour	17204608	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-small cell lung cancer	21829676	CNVD
Kartagener syndrome	16639409	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Breast cancer	21509527	CNVD
Melanoma	21693616	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Breast cancer	20409316	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1075 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42528200-42535400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:42530200-42535200	Enhancers	Placenta	Placenta
3	chr3:42530200-42535600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:42530200-42535600	Enhancers	Lung	lung
5	chr3:42530800-42535000	Enhancers	Primary B cells from cord blood	blood
6	chr3:42530800-42535000	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:42531000-42534400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:42532200-42534200	Weak transcription	Right Atrium	heart
9	chr3:42532200-42534400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:42532200-42534800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:42532200-42538800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:42532400-42534600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:42532400-42535600	Enhancers	GM12878-XiMat	blood
14	chr3:42532600-42535400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:42532600-42537600	Weak transcription	Hela-S3	cervix
16	chr3:42532600-42537800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:42532600-42538000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:42532600-42538000	Weak transcription	A549	lung
19	chr3:42532600-42538400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:42532600-42538400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:42532600-42538600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:42532600-42538800	Weak transcription	Esophagus	oesophagus
23	chr3:42532800-42534200	Weak transcription	Fetal Heart	heart
24	chr3:42532800-42537800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:42533200-42534400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr3:42533200-42534600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:42533200-42534600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr3:42533400-42535000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:42533600-42534200	Enhancers	Liver	Liver
30	chr3:42533600-42534200	Enhancers	Stomach Mucosa	stomach
31	chr3:42533600-42534200	Enhancers	HUVEC	blood vessel
32	chr3:42533600-42534400	Enhancers	Fetal Lung	lung
33	chr3:42533600-42534600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:42533600-42534600	Enhancers	Spleen	Spleen
35	chr3:42533600-42535600	Enhancers	Adipose Nuclei	Adipose
36	chr3:42533800-42534200	Enhancers	Gastric	stomach
37	chr3:42533800-42534400	Enhancers	Fetal Muscle Leg	muscle
38	chr3:42533800-42534800	Enhancers	Right Ventricle	heart
39	chr3:42533800-42535000	Enhancers	Duodenum Mucosa	Duodenum
40	chr3:42533800-42535000	Enhancers	Left Ventricle	heart
41	chr3:42533800-42538600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:42534000-42535200	Enhancers	Pancreas	Pancrea
43	chr3:42534000-42538600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:42534000-42539600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:42534200-42534400	Enhancers	Colon Smooth Muscle	Colon
46	chr3:42534200-42534800	Enhancers	Right Atrium	heart
47	chr3:42534200-42535400	Enhancers	Fetal Heart	heart
48	chr3:42534200-42538600	Weak transcription	Gastric	stomach
49	chr3:42534200-42538600	Weak transcription	Stomach Mucosa	stomach
50	chr3:42534400-42535200	Bivalent Enhancer	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

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